Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC34.32■■■■□ 3.08
TM9SF3Q9HD45 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC33.8■■■■□ 3
TM9SF3Q9HD45 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC33.39■■■□□ 2.94
TM9SF3Q9HD45 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC33.28■■■□□ 2.92
TM9SF3Q9HD45 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC33.19■■■□□ 2.9
TM9SF3Q9HD45 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC33.05■■■□□ 2.88
TM9SF3Q9HD45 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC33.03■■■□□ 2.88
TM9SF3Q9HD45 AL356512.1-201ENST00000607453 1739 ntBASIC32.84■■■□□ 2.85
TM9SF3Q9HD45 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC32.41■■■□□ 2.78
TM9SF3Q9HD45 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC32.24■■■□□ 2.75
TM9SF3Q9HD45 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC32.19■■■□□ 2.74
TM9SF3Q9HD45 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC32.14■■■□□ 2.74
TM9SF3Q9HD45 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC32.05■■■□□ 2.72
TM9SF3Q9HD45 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC32.01■■■□□ 2.72
TM9SF3Q9HD45 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC31.99■■■□□ 2.71
TM9SF3Q9HD45 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
TM9SF3Q9HD45 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC31.83■■■□□ 2.69
TM9SF3Q9HD45 HES6-203ENST00000409160 1600 ntTSL 2 BASIC31.77■■■□□ 2.68
TM9SF3Q9HD45 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
TM9SF3Q9HD45 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC31.52■■■□□ 2.64
TM9SF3Q9HD45 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC31.43■■■□□ 2.62
TM9SF3Q9HD45 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
TM9SF3Q9HD45 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
TM9SF3Q9HD45 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
TM9SF3Q9HD45 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
TM9SF3Q9HD45 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC31.37■■■□□ 2.61
TM9SF3Q9HD45 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC31.29■■■□□ 2.6
TM9SF3Q9HD45 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
TM9SF3Q9HD45 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC31.23■■■□□ 2.59
TM9SF3Q9HD45 INO80B-203ENST00000409917 796 ntTSL 2 BASIC31.12■■■□□ 2.57
TM9SF3Q9HD45 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC31.01■■■□□ 2.56
TM9SF3Q9HD45 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
TM9SF3Q9HD45 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC30.93■■■□□ 2.54
TM9SF3Q9HD45 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
TM9SF3Q9HD45 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC30.82■■■□□ 2.52
TM9SF3Q9HD45 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC30.71■■■□□ 2.51
TM9SF3Q9HD45 AC006077.2-201ENST00000623591 457 ntBASIC30.7■■■□□ 2.51
TM9SF3Q9HD45 ZNRF2P1-201ENST00000441407 443 ntBASIC30.67■■■□□ 2.5
TM9SF3Q9HD45 AC015813.7-201ENST00000623294 581 ntBASIC30.66■■■□□ 2.5
TM9SF3Q9HD45 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC30.61■■■□□ 2.49
TM9SF3Q9HD45 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC30.57■■■□□ 2.48
TM9SF3Q9HD45 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
TM9SF3Q9HD45 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
TM9SF3Q9HD45 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
TM9SF3Q9HD45 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC30.34■■■□□ 2.45
TM9SF3Q9HD45 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC30.34■■■□□ 2.45
TM9SF3Q9HD45 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC30.32■■■□□ 2.45
TM9SF3Q9HD45 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
TM9SF3Q9HD45 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC30.2■■■□□ 2.43
TM9SF3Q9HD45 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
TM9SF3Q9HD45 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
TM9SF3Q9HD45 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC30.1■■■□□ 2.41
TM9SF3Q9HD45 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC29.94■■■□□ 2.38
TM9SF3Q9HD45 AP002365.1-201ENST00000603448 772 ntBASIC29.91■■■□□ 2.38
TM9SF3Q9HD45 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
TM9SF3Q9HD45 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
TM9SF3Q9HD45 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
TM9SF3Q9HD45 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC29.79■■■□□ 2.36
TM9SF3Q9HD45 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC29.78■■■□□ 2.36
TM9SF3Q9HD45 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
TM9SF3Q9HD45 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
TM9SF3Q9HD45 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC29.74■■■□□ 2.35
TM9SF3Q9HD45 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC29.73■■■□□ 2.35
TM9SF3Q9HD45 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC29.72■■■□□ 2.35
TM9SF3Q9HD45 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
TM9SF3Q9HD45 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
TM9SF3Q9HD45 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC29.67■■■□□ 2.34
TM9SF3Q9HD45 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
TM9SF3Q9HD45 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC29.64■■■□□ 2.34
TM9SF3Q9HD45 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC29.64■■■□□ 2.34
TM9SF3Q9HD45 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC29.62■■■□□ 2.33
TM9SF3Q9HD45 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC29.59■■■□□ 2.33
TM9SF3Q9HD45 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
TM9SF3Q9HD45 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC29.58■■■□□ 2.33
TM9SF3Q9HD45 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
TM9SF3Q9HD45 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC29.56■■■□□ 2.32
TM9SF3Q9HD45 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
TM9SF3Q9HD45 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC29.54■■■□□ 2.32
TM9SF3Q9HD45 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC29.54■■■□□ 2.32
TM9SF3Q9HD45 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC29.53■■■□□ 2.32
TM9SF3Q9HD45 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC29.52■■■□□ 2.32
TM9SF3Q9HD45 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.32
TM9SF3Q9HD45 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC29.49■■■□□ 2.31
TM9SF3Q9HD45 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC29.49■■■□□ 2.31
TM9SF3Q9HD45 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC29.47■■■□□ 2.31
TM9SF3Q9HD45 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC29.42■■■□□ 2.3
TM9SF3Q9HD45 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC29.4■■■□□ 2.3
TM9SF3Q9HD45 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC29.38■■■□□ 2.29
TM9SF3Q9HD45 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC29.37■■■□□ 2.29
TM9SF3Q9HD45 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC29.37■■■□□ 2.29
TM9SF3Q9HD45 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC29.37■■■□□ 2.29
TM9SF3Q9HD45 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
TM9SF3Q9HD45 DYNLL1-208ENST00000550178 581 ntBASIC29.35■■■□□ 2.29
TM9SF3Q9HD45 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC29.32■■■□□ 2.28
TM9SF3Q9HD45 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
TM9SF3Q9HD45 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC29.3■■■□□ 2.28
TM9SF3Q9HD45 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC29.29■■■□□ 2.28
TM9SF3Q9HD45 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
TM9SF3Q9HD45 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.28
TM9SF3Q9HD45 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC29.25■■■□□ 2.27
Retrieved 100 of 98,524 protein–RNA pairs in 8.6 ms