Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC37.61■■■■□ 3.61
CDX2Q99626 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC37.26■■■■□ 3.56
CDX2Q99626 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC37.06■■■■□ 3.52
CDX2Q99626 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC36.32■■■■□ 3.41
CDX2Q99626 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC36.25■■■■□ 3.39
CDX2Q99626 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC36.08■■■■□ 3.37
CDX2Q99626 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC35.97■■■■□ 3.35
CDX2Q99626 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC35.94■■■■□ 3.34
CDX2Q99626 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC35.87■■■■□ 3.33
CDX2Q99626 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC35.78■■■■□ 3.32
CDX2Q99626 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC35.41■■■■□ 3.26
CDX2Q99626 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC35.37■■■■□ 3.25
CDX2Q99626 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC35.36■■■■□ 3.25
CDX2Q99626 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC35.26■■■■□ 3.24
CDX2Q99626 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC35.23■■■■□ 3.23
CDX2Q99626 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC35.21■■■■□ 3.23
CDX2Q99626 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC35.1■■■■□ 3.21
CDX2Q99626 AL356512.1-201ENST00000607453 1739 ntBASIC34.92■■■■□ 3.18
CDX2Q99626 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC34.92■■■■□ 3.18
CDX2Q99626 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC34.82■■■■□ 3.16
CDX2Q99626 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC34.8■■■■□ 3.16
CDX2Q99626 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC34.8■■■■□ 3.16
CDX2Q99626 ZNRF2P1-201ENST00000441407 443 ntBASIC34.68■■■■□ 3.14
CDX2Q99626 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC34.66■■■■□ 3.14
CDX2Q99626 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC34.57■■■■□ 3.12
CDX2Q99626 AC006077.2-201ENST00000623591 457 ntBASIC34.57■■■■□ 3.12
CDX2Q99626 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC34.55■■■■□ 3.12
CDX2Q99626 INO80B-203ENST00000409917 796 ntTSL 2 BASIC34.54■■■■□ 3.12
CDX2Q99626 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC34.45■■■■□ 3.11
CDX2Q99626 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC34.36■■■■□ 3.09
CDX2Q99626 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC34.15■■■■□ 3.06
CDX2Q99626 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC34.06■■■■□ 3.04
CDX2Q99626 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC34.01■■■■□ 3.04
CDX2Q99626 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC33.89■■■■□ 3.02
CDX2Q99626 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC33.88■■■■□ 3.01
CDX2Q99626 AC015813.7-201ENST00000623294 581 ntBASIC33.86■■■■□ 3.01
CDX2Q99626 AP002365.1-201ENST00000603448 772 ntBASIC33.78■■■■□ 3
CDX2Q99626 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC33.6■■■□□ 2.97
CDX2Q99626 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC33.6■■■□□ 2.97
CDX2Q99626 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC33.48■■■□□ 2.95
CDX2Q99626 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC33.47■■■□□ 2.95
CDX2Q99626 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC33.46■■■□□ 2.95
CDX2Q99626 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC33.34■■■□□ 2.93
CDX2Q99626 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC33.32■■■□□ 2.93
CDX2Q99626 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC33.3■■■□□ 2.92
CDX2Q99626 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC33.29■■■□□ 2.92
CDX2Q99626 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC33.27■■■□□ 2.92
CDX2Q99626 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC33.26■■■□□ 2.91
CDX2Q99626 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC33.17■■■□□ 2.9
CDX2Q99626 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC33.15■■■□□ 2.9
CDX2Q99626 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC33.13■■■□□ 2.89
CDX2Q99626 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC33.07■■■□□ 2.88
CDX2Q99626 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC33.05■■■□□ 2.88
CDX2Q99626 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC33.05■■■□□ 2.88
CDX2Q99626 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC33.04■■■□□ 2.88
CDX2Q99626 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
CDX2Q99626 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC32.95■■■□□ 2.87
CDX2Q99626 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC32.89■■■□□ 2.86
CDX2Q99626 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC32.88■■■□□ 2.85
CDX2Q99626 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC32.86■■■□□ 2.85
CDX2Q99626 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC32.85■■■□□ 2.85
CDX2Q99626 HES6-203ENST00000409160 1600 ntTSL 2 BASIC32.82■■■□□ 2.84
CDX2Q99626 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
CDX2Q99626 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC32.78■■■□□ 2.84
CDX2Q99626 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC32.76■■■□□ 2.83
CDX2Q99626 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC32.75■■■□□ 2.83
CDX2Q99626 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC32.72■■■□□ 2.83
CDX2Q99626 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC32.7■■■□□ 2.83
CDX2Q99626 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC32.67■■■□□ 2.82
CDX2Q99626 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
CDX2Q99626 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC32.64■■■□□ 2.82
CDX2Q99626 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC32.63■■■□□ 2.81
CDX2Q99626 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC32.63■■■□□ 2.81
CDX2Q99626 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC32.62■■■□□ 2.81
CDX2Q99626 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC32.61■■■□□ 2.81
CDX2Q99626 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC32.6■■■□□ 2.81
CDX2Q99626 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC32.59■■■□□ 2.81
CDX2Q99626 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
CDX2Q99626 DYNLL1-208ENST00000550178 581 ntBASIC32.57■■■□□ 2.8
CDX2Q99626 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC32.54■■■□□ 2.8
CDX2Q99626 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
CDX2Q99626 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC32.5■■■□□ 2.79
CDX2Q99626 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
CDX2Q99626 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC32.5■■■□□ 2.79
CDX2Q99626 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
CDX2Q99626 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC32.45■■■□□ 2.79
CDX2Q99626 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC32.43■■■□□ 2.78
CDX2Q99626 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC32.42■■■□□ 2.78
CDX2Q99626 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC32.41■■■□□ 2.78
CDX2Q99626 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
CDX2Q99626 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
CDX2Q99626 AL031258.1-201ENST00000623562 325 ntBASIC32.3■■■□□ 2.76
CDX2Q99626 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC32.29■■■□□ 2.76
CDX2Q99626 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC32.29■■■□□ 2.76
CDX2Q99626 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
CDX2Q99626 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC32.28■■■□□ 2.76
CDX2Q99626 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC32.28■■■□□ 2.76
CDX2Q99626 RPS2P35-201ENST00000443417 897 ntBASIC32.27■■■□□ 2.76
CDX2Q99626 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC32.26■■■□□ 2.75
CDX2Q99626 RARRES2P7-201ENST00000567349 469 ntBASIC32.21■■■□□ 2.75
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms