Protein–RNA interactions for Protein: Q8N196

SIX5, Homeobox protein SIX5, humanhuman

Predictions only

Length 739 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX5Q8N196 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC35.56■■■■□ 3.28
SIX5Q8N196 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC35.53■■■■□ 3.28
SIX5Q8N196 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC35.08■■■■□ 3.21
SIX5Q8N196 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC34.71■■■■□ 3.15
SIX5Q8N196 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC34.37■■■■□ 3.09
SIX5Q8N196 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC34.06■■■■□ 3.04
SIX5Q8N196 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC34.01■■■■□ 3.03
SIX5Q8N196 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC33.95■■■■□ 3.03
SIX5Q8N196 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC33.92■■■■□ 3.02
SIX5Q8N196 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC33.84■■■■□ 3.01
SIX5Q8N196 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC33.72■■■□□ 2.99
SIX5Q8N196 AL356512.1-201ENST00000607453 1739 ntBASIC33.7■■■□□ 2.99
SIX5Q8N196 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC33.61■■■□□ 2.97
SIX5Q8N196 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC33.56■■■□□ 2.96
SIX5Q8N196 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC33.45■■■□□ 2.95
SIX5Q8N196 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC33.35■■■□□ 2.93
SIX5Q8N196 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC33.14■■■□□ 2.9
SIX5Q8N196 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC33.12■■■□□ 2.89
SIX5Q8N196 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC32.97■■■□□ 2.87
SIX5Q8N196 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC32.96■■■□□ 2.87
SIX5Q8N196 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC32.96■■■□□ 2.87
SIX5Q8N196 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC32.94■■■□□ 2.86
SIX5Q8N196 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC32.92■■■□□ 2.86
SIX5Q8N196 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC32.87■■■□□ 2.85
SIX5Q8N196 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC32.85■■■□□ 2.85
SIX5Q8N196 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
SIX5Q8N196 INO80B-203ENST00000409917 796 ntTSL 2 BASIC32.67■■■□□ 2.82
SIX5Q8N196 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC32.54■■■□□ 2.8
SIX5Q8N196 ZNRF2P1-201ENST00000441407 443 ntBASIC32.48■■■□□ 2.79
SIX5Q8N196 AC006077.2-201ENST00000623591 457 ntBASIC32.44■■■□□ 2.78
SIX5Q8N196 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC32.39■■■□□ 2.78
SIX5Q8N196 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC32.28■■■□□ 2.76
SIX5Q8N196 HES6-203ENST00000409160 1600 ntTSL 2 BASIC32.25■■■□□ 2.75
SIX5Q8N196 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC32.21■■■□□ 2.75
SIX5Q8N196 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
SIX5Q8N196 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC32.11■■■□□ 2.73
SIX5Q8N196 AC015813.7-201ENST00000623294 581 ntBASIC32.1■■■□□ 2.73
SIX5Q8N196 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC32.02■■■□□ 2.72
SIX5Q8N196 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC31.95■■■□□ 2.7
SIX5Q8N196 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
SIX5Q8N196 AP002365.1-201ENST00000603448 772 ntBASIC31.67■■■□□ 2.66
SIX5Q8N196 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
SIX5Q8N196 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC31.63■■■□□ 2.65
SIX5Q8N196 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC31.52■■■□□ 2.64
SIX5Q8N196 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC31.48■■■□□ 2.63
SIX5Q8N196 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
SIX5Q8N196 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
SIX5Q8N196 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC31.43■■■□□ 2.62
SIX5Q8N196 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC31.42■■■□□ 2.62
SIX5Q8N196 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC31.41■■■□□ 2.62
SIX5Q8N196 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC31.38■■■□□ 2.61
SIX5Q8N196 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
SIX5Q8N196 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC31.29■■■□□ 2.6
SIX5Q8N196 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
SIX5Q8N196 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC31.28■■■□□ 2.6
SIX5Q8N196 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC31.26■■■□□ 2.59
SIX5Q8N196 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC31.26■■■□□ 2.59
SIX5Q8N196 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
SIX5Q8N196 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
SIX5Q8N196 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
SIX5Q8N196 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC31.13■■■□□ 2.57
SIX5Q8N196 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC31.12■■■□□ 2.57
SIX5Q8N196 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC31.07■■■□□ 2.56
SIX5Q8N196 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC31.03■■■□□ 2.56
SIX5Q8N196 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC30.96■■■□□ 2.55
SIX5Q8N196 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC30.93■■■□□ 2.54
SIX5Q8N196 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC30.93■■■□□ 2.54
SIX5Q8N196 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
SIX5Q8N196 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC30.89■■■□□ 2.54
SIX5Q8N196 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
SIX5Q8N196 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
SIX5Q8N196 DYNLL1-208ENST00000550178 581 ntBASIC30.81■■■□□ 2.52
SIX5Q8N196 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC30.81■■■□□ 2.52
SIX5Q8N196 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
SIX5Q8N196 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC30.79■■■□□ 2.52
SIX5Q8N196 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
SIX5Q8N196 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
SIX5Q8N196 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
SIX5Q8N196 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC30.75■■■□□ 2.51
SIX5Q8N196 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
SIX5Q8N196 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC30.74■■■□□ 2.51
SIX5Q8N196 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC30.73■■■□□ 2.51
SIX5Q8N196 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC30.68■■■□□ 2.5
SIX5Q8N196 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
SIX5Q8N196 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
SIX5Q8N196 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC30.66■■■□□ 2.5
SIX5Q8N196 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC30.62■■■□□ 2.49
SIX5Q8N196 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC30.59■■■□□ 2.49
SIX5Q8N196 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC30.57■■■□□ 2.48
SIX5Q8N196 AL031258.1-201ENST00000623562 325 ntBASIC30.54■■■□□ 2.48
SIX5Q8N196 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
SIX5Q8N196 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
SIX5Q8N196 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
SIX5Q8N196 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC30.5■■■□□ 2.47
SIX5Q8N196 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC30.48■■■□□ 2.47
SIX5Q8N196 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC30.48■■■□□ 2.47
SIX5Q8N196 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC30.48■■■□□ 2.47
SIX5Q8N196 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC30.47■■■□□ 2.47
SIX5Q8N196 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC30.46■■■□□ 2.47
SIX5Q8N196 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms