Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC35.57■■■■□ 3.28
VCPP55072 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC35.55■■■■□ 3.28
VCPP55072 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC35.19■■■■□ 3.22
VCPP55072 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC34.77■■■■□ 3.16
VCPP55072 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC34.48■■■■□ 3.11
VCPP55072 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC34.45■■■■□ 3.1
VCPP55072 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC34.43■■■■□ 3.1
VCPP55072 AL356512.1-201ENST00000607453 1739 ntBASIC34.35■■■■□ 3.09
VCPP55072 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC34.21■■■■□ 3.07
VCPP55072 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC34.14■■■■□ 3.06
VCPP55072 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC34.07■■■■□ 3.04
VCPP55072 HES6-203ENST00000409160 1600 ntTSL 2 BASIC34.03■■■■□ 3.04
VCPP55072 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC34■■■■□ 3.03
VCPP55072 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC33.93■■■■□ 3.02
VCPP55072 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC33.86■■■■□ 3.01
VCPP55072 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC33.7■■■□□ 2.99
VCPP55072 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC33.55■■■□□ 2.96
VCPP55072 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC33.55■■■□□ 2.96
VCPP55072 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC33.49■■■□□ 2.95
VCPP55072 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC33.46■■■□□ 2.95
VCPP55072 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC33.44■■■□□ 2.94
VCPP55072 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC33.33■■■□□ 2.93
VCPP55072 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC33.32■■■□□ 2.93
VCPP55072 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC33.21■■■□□ 2.91
VCPP55072 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC33.12■■■□□ 2.89
VCPP55072 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.87
VCPP55072 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC32.95■■■□□ 2.87
VCPP55072 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC32.94■■■□□ 2.86
VCPP55072 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC32.93■■■□□ 2.86
VCPP55072 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC32.92■■■□□ 2.86
VCPP55072 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
VCPP55072 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
VCPP55072 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
VCPP55072 ZNRF2P1-201ENST00000441407 443 ntBASIC32.71■■■□□ 2.83
VCPP55072 INO80B-203ENST00000409917 796 ntTSL 2 BASIC32.7■■■□□ 2.83
VCPP55072 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC32.69■■■□□ 2.82
VCPP55072 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC32.65■■■□□ 2.82
VCPP55072 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC32.61■■■□□ 2.81
VCPP55072 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC32.61■■■□□ 2.81
VCPP55072 AC006077.2-201ENST00000623591 457 ntBASIC32.59■■■□□ 2.81
VCPP55072 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC32.49■■■□□ 2.79
VCPP55072 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC32.46■■■□□ 2.79
VCPP55072 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC32.38■■■□□ 2.77
VCPP55072 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC32.37■■■□□ 2.77
VCPP55072 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC32.22■■■□□ 2.75
VCPP55072 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC32.2■■■□□ 2.75
VCPP55072 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC32.2■■■□□ 2.74
VCPP55072 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
VCPP55072 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC32.07■■■□□ 2.73
VCPP55072 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC32.07■■■□□ 2.72
VCPP55072 AC015813.7-201ENST00000623294 581 ntBASIC32.05■■■□□ 2.72
VCPP55072 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
VCPP55072 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
VCPP55072 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
VCPP55072 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC31.89■■■□□ 2.7
VCPP55072 AP002365.1-201ENST00000603448 772 ntBASIC31.88■■■□□ 2.69
VCPP55072 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC31.88■■■□□ 2.69
VCPP55072 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC31.82■■■□□ 2.68
VCPP55072 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC31.77■■■□□ 2.68
VCPP55072 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC31.69■■■□□ 2.66
VCPP55072 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
VCPP55072 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC31.65■■■□□ 2.66
VCPP55072 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC31.64■■■□□ 2.66
VCPP55072 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC31.63■■■□□ 2.65
VCPP55072 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
VCPP55072 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC31.62■■■□□ 2.65
VCPP55072 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC31.62■■■□□ 2.65
VCPP55072 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
VCPP55072 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
VCPP55072 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC31.52■■■□□ 2.64
VCPP55072 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC31.49■■■□□ 2.63
VCPP55072 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC31.45■■■□□ 2.63
VCPP55072 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC31.44■■■□□ 2.62
VCPP55072 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC31.42■■■□□ 2.62
VCPP55072 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC31.41■■■□□ 2.62
VCPP55072 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
VCPP55072 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
VCPP55072 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC31.35■■■□□ 2.61
VCPP55072 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC31.3■■■□□ 2.6
VCPP55072 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
VCPP55072 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC31.25■■■□□ 2.59
VCPP55072 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC31.24■■■□□ 2.59
VCPP55072 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC31.21■■■□□ 2.59
VCPP55072 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC31.2■■■□□ 2.59
VCPP55072 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC31.2■■■□□ 2.58
VCPP55072 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC31.18■■■□□ 2.58
VCPP55072 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC31.17■■■□□ 2.58
VCPP55072 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
VCPP55072 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
VCPP55072 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC31.15■■■□□ 2.58
VCPP55072 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC31.07■■■□□ 2.56
VCPP55072 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
VCPP55072 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
VCPP55072 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC30.97■■■□□ 2.55
VCPP55072 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC30.94■■■□□ 2.54
VCPP55072 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC30.93■■■□□ 2.54
VCPP55072 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
VCPP55072 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
VCPP55072 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC30.91■■■□□ 2.54
VCPP55072 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC30.91■■■□□ 2.54
Retrieved 100 of 98,524 protein–RNA pairs in 14.4 ms