Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC31.65■■■□□ 2.66
SOX3P41225 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
SOX3P41225 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC30.7■■■□□ 2.5
SOX3P41225 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
SOX3P41225 AL356512.1-201ENST00000607453 1739 ntBASIC30.64■■■□□ 2.5
SOX3P41225 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
SOX3P41225 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC30.62■■■□□ 2.49
SOX3P41225 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC30.29■■■□□ 2.44
SOX3P41225 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC30.07■■■□□ 2.4
SOX3P41225 HES6-203ENST00000409160 1600 ntTSL 2 BASIC29.99■■■□□ 2.39
SOX3P41225 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC29.91■■■□□ 2.38
SOX3P41225 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC29.85■■■□□ 2.37
SOX3P41225 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC29.74■■■□□ 2.35
SOX3P41225 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC29.58■■■□□ 2.33
SOX3P41225 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC29.54■■■□□ 2.32
SOX3P41225 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC29.45■■■□□ 2.31
SOX3P41225 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC29.44■■■□□ 2.3
SOX3P41225 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
SOX3P41225 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC29.33■■■□□ 2.29
SOX3P41225 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
SOX3P41225 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC29.25■■■□□ 2.27
SOX3P41225 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC29.24■■■□□ 2.27
SOX3P41225 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC29.23■■■□□ 2.27
SOX3P41225 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC29.23■■■□□ 2.27
SOX3P41225 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC29.01■■■□□ 2.23
SOX3P41225 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
SOX3P41225 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
SOX3P41225 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC28.71■■■□□ 2.19
SOX3P41225 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC28.71■■■□□ 2.19
SOX3P41225 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
SOX3P41225 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC28.63■■■□□ 2.17
SOX3P41225 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
SOX3P41225 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
SOX3P41225 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
SOX3P41225 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC28.52■■■□□ 2.16
SOX3P41225 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC28.48■■■□□ 2.15
SOX3P41225 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
SOX3P41225 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC28.46■■■□□ 2.15
SOX3P41225 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
SOX3P41225 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC28.43■■■□□ 2.14
SOX3P41225 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
SOX3P41225 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC28.41■■■□□ 2.14
SOX3P41225 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC28.39■■■□□ 2.14
SOX3P41225 INO80B-203ENST00000409917 796 ntTSL 2 BASIC28.29■■■□□ 2.12
SOX3P41225 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC28.28■■■□□ 2.12
SOX3P41225 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC28.26■■■□□ 2.11
SOX3P41225 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC28.24■■■□□ 2.11
SOX3P41225 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
SOX3P41225 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
SOX3P41225 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
SOX3P41225 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC27.98■■■□□ 2.07
SOX3P41225 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
SOX3P41225 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC27.95■■■□□ 2.07
SOX3P41225 AC015813.7-201ENST00000623294 581 ntBASIC27.93■■■□□ 2.06
SOX3P41225 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
SOX3P41225 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC27.87■■■□□ 2.05
SOX3P41225 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC27.84■■■□□ 2.05
SOX3P41225 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
SOX3P41225 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC27.76■■■□□ 2.03
SOX3P41225 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC27.76■■■□□ 2.03
SOX3P41225 AC006077.2-201ENST00000623591 457 ntBASIC27.64■■■□□ 2.02
SOX3P41225 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC27.63■■■□□ 2.01
SOX3P41225 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
SOX3P41225 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC27.6■■■□□ 2.01
SOX3P41225 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC27.56■■■□□ 2
SOX3P41225 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC27.55■■■□□ 2
SOX3P41225 ZNRF2P1-201ENST00000441407 443 ntBASIC27.54■■■□□ 2
SOX3P41225 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
SOX3P41225 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
SOX3P41225 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
SOX3P41225 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC27.46■■□□□ 1.99
SOX3P41225 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
SOX3P41225 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC27.42■■□□□ 1.98
SOX3P41225 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
SOX3P41225 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
SOX3P41225 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
SOX3P41225 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
SOX3P41225 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC27.32■■□□□ 1.96
SOX3P41225 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC27.31■■□□□ 1.96
SOX3P41225 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC27.28■■□□□ 1.96
SOX3P41225 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
SOX3P41225 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
SOX3P41225 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
SOX3P41225 ILK-212ENST00000532063 1617 ntTSL 2 BASIC27.19■■□□□ 1.94
SOX3P41225 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC27.17■■□□□ 1.94
SOX3P41225 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
SOX3P41225 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC27.13■■□□□ 1.93
SOX3P41225 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
SOX3P41225 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
SOX3P41225 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC27.04■■□□□ 1.92
SOX3P41225 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
SOX3P41225 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
SOX3P41225 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
SOX3P41225 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC27■■□□□ 1.91
SOX3P41225 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
SOX3P41225 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
SOX3P41225 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC26.92■■□□□ 1.9
SOX3P41225 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC26.92■■□□□ 1.9
SOX3P41225 AP002365.1-201ENST00000603448 772 ntBASIC26.9■■□□□ 1.9
SOX3P41225 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC26.89■■□□□ 1.9
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms