Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC42.02■■■■■ 4.32
COL1A1P02452 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC41.1■■■■■ 4.17
COL1A1P02452 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC40.83■■■■■ 4.13
COL1A1P02452 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC40.81■■■■■ 4.12
COL1A1P02452 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC40.67■■■■■ 4.1
COL1A1P02452 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC40.64■■■■■ 4.1
COL1A1P02452 AL356512.1-201ENST00000607453 1739 ntBASIC40.51■■■■■ 4.08
COL1A1P02452 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC40.5■■■■■ 4.07
COL1A1P02452 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC39.5■■■■□ 3.91
COL1A1P02452 HES6-203ENST00000409160 1600 ntTSL 2 BASIC39.47■■■■□ 3.91
COL1A1P02452 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC39.32■■■■□ 3.89
COL1A1P02452 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC39.27■■■■□ 3.88
COL1A1P02452 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC39.22■■■■□ 3.87
COL1A1P02452 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC39.21■■■■□ 3.87
COL1A1P02452 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC39.19■■■■□ 3.86
COL1A1P02452 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC39.18■■■■□ 3.86
COL1A1P02452 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC38.98■■■■□ 3.83
COL1A1P02452 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC38.92■■■■□ 3.82
COL1A1P02452 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC38.86■■■■□ 3.81
COL1A1P02452 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC38.83■■■■□ 3.81
COL1A1P02452 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC38.79■■■■□ 3.8
COL1A1P02452 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC38.59■■■■□ 3.77
COL1A1P02452 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC38.51■■■■□ 3.76
COL1A1P02452 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC38.46■■■■□ 3.75
COL1A1P02452 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC38.27■■■■□ 3.72
COL1A1P02452 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC38.06■■■■□ 3.68
COL1A1P02452 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC38.06■■■■□ 3.68
COL1A1P02452 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC37.96■■■■□ 3.67
COL1A1P02452 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC37.91■■■■□ 3.66
COL1A1P02452 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC37.9■■■■□ 3.66
COL1A1P02452 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC37.86■■■■□ 3.65
COL1A1P02452 INO80B-203ENST00000409917 796 ntTSL 2 BASIC37.78■■■■□ 3.64
COL1A1P02452 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC37.75■■■■□ 3.63
COL1A1P02452 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC37.73■■■■□ 3.63
COL1A1P02452 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC37.71■■■■□ 3.63
COL1A1P02452 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC37.71■■■■□ 3.63
COL1A1P02452 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC37.53■■■■□ 3.6
COL1A1P02452 AC006077.2-201ENST00000623591 457 ntBASIC37.42■■■■□ 3.58
COL1A1P02452 ZNRF2P1-201ENST00000441407 443 ntBASIC37.4■■■■□ 3.58
COL1A1P02452 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC37.38■■■■□ 3.57
COL1A1P02452 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC37.38■■■■□ 3.57
COL1A1P02452 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC37.28■■■■□ 3.56
COL1A1P02452 AC015813.7-201ENST00000623294 581 ntBASIC37.24■■■■□ 3.55
COL1A1P02452 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC37.18■■■■□ 3.54
COL1A1P02452 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC37.15■■■■□ 3.54
COL1A1P02452 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC36.95■■■■□ 3.51
COL1A1P02452 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC36.94■■■■□ 3.5
COL1A1P02452 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC36.89■■■■□ 3.5
COL1A1P02452 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC36.89■■■■□ 3.5
COL1A1P02452 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC36.84■■■■□ 3.49
COL1A1P02452 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC36.83■■■■□ 3.49
COL1A1P02452 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC36.83■■■■□ 3.49
COL1A1P02452 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC36.74■■■■□ 3.47
COL1A1P02452 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC36.67■■■■□ 3.46
COL1A1P02452 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC36.64■■■■□ 3.46
COL1A1P02452 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC36.62■■■■□ 3.45
COL1A1P02452 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC36.57■■■■□ 3.44
COL1A1P02452 AP002365.1-201ENST00000603448 772 ntBASIC36.5■■■■□ 3.43
COL1A1P02452 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC36.48■■■■□ 3.43
COL1A1P02452 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC36.47■■■■□ 3.43
COL1A1P02452 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC36.4■■■■□ 3.42
COL1A1P02452 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC36.39■■■■□ 3.42
COL1A1P02452 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC36.33■■■■□ 3.41
COL1A1P02452 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC36.24■■■■□ 3.39
COL1A1P02452 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC36.2■■■■□ 3.39
COL1A1P02452 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC36.19■■■■□ 3.38
COL1A1P02452 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC36.18■■■■□ 3.38
COL1A1P02452 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC36.16■■■■□ 3.38
COL1A1P02452 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC36.12■■■■□ 3.37
COL1A1P02452 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC36.11■■■■□ 3.37
COL1A1P02452 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC36.11■■■■□ 3.37
COL1A1P02452 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC36.1■■■■□ 3.37
COL1A1P02452 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC36.06■■■■□ 3.36
COL1A1P02452 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC36.05■■■■□ 3.36
COL1A1P02452 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC36.04■■■■□ 3.36
COL1A1P02452 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC36.04■■■■□ 3.36
COL1A1P02452 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC36.03■■■■□ 3.36
COL1A1P02452 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC36.01■■■■□ 3.36
COL1A1P02452 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC35.99■■■■□ 3.35
COL1A1P02452 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC35.98■■■■□ 3.35
COL1A1P02452 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC35.97■■■■□ 3.35
COL1A1P02452 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC35.96■■■■□ 3.35
COL1A1P02452 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC35.94■■■■□ 3.34
COL1A1P02452 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC35.83■■■■□ 3.33
COL1A1P02452 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC35.81■■■■□ 3.32
COL1A1P02452 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC35.76■■■■□ 3.31
COL1A1P02452 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC35.74■■■■□ 3.31
COL1A1P02452 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC35.74■■■■□ 3.31
COL1A1P02452 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC35.73■■■■□ 3.31
COL1A1P02452 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC35.69■■■■□ 3.3
COL1A1P02452 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC35.68■■■■□ 3.3
COL1A1P02452 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC35.67■■■■□ 3.3
COL1A1P02452 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC35.65■■■■□ 3.3
COL1A1P02452 DYNLL1-208ENST00000550178 581 ntBASIC35.65■■■■□ 3.3
COL1A1P02452 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC35.64■■■■□ 3.3
COL1A1P02452 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC35.63■■■■□ 3.29
COL1A1P02452 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC35.63■■■■□ 3.29
COL1A1P02452 ILK-212ENST00000532063 1617 ntTSL 2 BASIC35.62■■■■□ 3.29
COL1A1P02452 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC35.6■■■■□ 3.29
COL1A1P02452 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC35.6■■■■□ 3.29
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms