Protein–RNA interactions for Protein: O15353

FOXN1, Forkhead box protein N1, humanhuman

Predictions only

Length 648 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN1O15353 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC41.09■■■■■ 4.17
FOXN1O15353 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC40.76■■■■■ 4.12
FOXN1O15353 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC40.21■■■■■ 4.03
FOXN1O15353 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC39.78■■■■□ 3.96
FOXN1O15353 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC39.57■■■■□ 3.93
FOXN1O15353 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC39.56■■■■□ 3.92
FOXN1O15353 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC39.47■■■■□ 3.91
FOXN1O15353 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC39.23■■■■□ 3.87
FOXN1O15353 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC39.18■■■■□ 3.86
FOXN1O15353 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC38.93■■■■□ 3.82
FOXN1O15353 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC38.81■■■■□ 3.8
FOXN1O15353 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC38.73■■■■□ 3.79
FOXN1O15353 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC38.57■■■■□ 3.76
FOXN1O15353 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC38.52■■■■□ 3.76
FOXN1O15353 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC38.38■■■■□ 3.73
FOXN1O15353 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC38.37■■■■□ 3.73
FOXN1O15353 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC38.15■■■■□ 3.7
FOXN1O15353 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC38.14■■■■□ 3.7
FOXN1O15353 ZNRF2P1-201ENST00000441407 443 ntBASIC38.02■■■■□ 3.68
FOXN1O15353 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC38.02■■■■□ 3.68
FOXN1O15353 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC38■■■■□ 3.67
FOXN1O15353 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC38■■■■□ 3.67
FOXN1O15353 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC37.96■■■■□ 3.67
FOXN1O15353 AC006077.2-201ENST00000623591 457 ntBASIC37.84■■■■□ 3.65
FOXN1O15353 AL356512.1-201ENST00000607453 1739 ntBASIC37.79■■■■□ 3.64
FOXN1O15353 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC37.73■■■■□ 3.63
FOXN1O15353 INO80B-203ENST00000409917 796 ntTSL 2 BASIC37.71■■■■□ 3.63
FOXN1O15353 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC37.69■■■■□ 3.62
FOXN1O15353 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC37.6■■■■□ 3.61
FOXN1O15353 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC37.37■■■■□ 3.57
FOXN1O15353 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC37.36■■■■□ 3.57
FOXN1O15353 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC37.25■■■■□ 3.55
FOXN1O15353 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC37.2■■■■□ 3.55
FOXN1O15353 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC37.05■■■■□ 3.52
FOXN1O15353 AP002365.1-201ENST00000603448 772 ntBASIC37.04■■■■□ 3.52
FOXN1O15353 HES6-203ENST00000409160 1600 ntTSL 2 BASIC36.92■■■■□ 3.5
FOXN1O15353 AC015813.7-201ENST00000623294 581 ntBASIC36.92■■■■□ 3.5
FOXN1O15353 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC36.83■■■■□ 3.49
FOXN1O15353 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC36.83■■■■□ 3.49
FOXN1O15353 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC36.78■■■■□ 3.48
FOXN1O15353 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC36.76■■■■□ 3.47
FOXN1O15353 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC36.69■■■■□ 3.46
FOXN1O15353 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC36.68■■■■□ 3.46
FOXN1O15353 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC36.67■■■■□ 3.46
FOXN1O15353 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC36.61■■■■□ 3.45
FOXN1O15353 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC36.58■■■■□ 3.45
FOXN1O15353 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC36.56■■■■□ 3.44
FOXN1O15353 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC36.55■■■■□ 3.44
FOXN1O15353 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC36.53■■■■□ 3.44
FOXN1O15353 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC36.52■■■■□ 3.44
FOXN1O15353 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC36.5■■■■□ 3.43
FOXN1O15353 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC36.47■■■■□ 3.43
FOXN1O15353 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC36.43■■■■□ 3.42
FOXN1O15353 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC36.38■■■■□ 3.41
FOXN1O15353 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC36.36■■■■□ 3.41
FOXN1O15353 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC36.24■■■■□ 3.39
FOXN1O15353 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC36.21■■■■□ 3.39
FOXN1O15353 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC36.13■■■■□ 3.37
FOXN1O15353 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC36.08■■■■□ 3.37
FOXN1O15353 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC36.07■■■■□ 3.36
FOXN1O15353 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC36.02■■■■□ 3.36
FOXN1O15353 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC36.02■■■■□ 3.36
FOXN1O15353 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC35.97■■■■□ 3.35
FOXN1O15353 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC35.96■■■■□ 3.35
FOXN1O15353 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC35.86■■■■□ 3.33
FOXN1O15353 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC35.86■■■■□ 3.33
FOXN1O15353 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC35.86■■■■□ 3.33
FOXN1O15353 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC35.84■■■■□ 3.33
FOXN1O15353 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC35.82■■■■□ 3.32
FOXN1O15353 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC35.82■■■■□ 3.32
FOXN1O15353 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC35.79■■■■□ 3.32
FOXN1O15353 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC35.78■■■■□ 3.32
FOXN1O15353 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC35.78■■■■□ 3.32
FOXN1O15353 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC35.75■■■■□ 3.31
FOXN1O15353 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC35.75■■■■□ 3.31
FOXN1O15353 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC35.75■■■■□ 3.31
FOXN1O15353 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC35.71■■■■□ 3.31
FOXN1O15353 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC35.68■■■■□ 3.3
FOXN1O15353 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC35.67■■■■□ 3.3
FOXN1O15353 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC35.67■■■■□ 3.3
FOXN1O15353 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC35.64■■■■□ 3.3
FOXN1O15353 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC35.58■■■■□ 3.29
FOXN1O15353 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC35.57■■■■□ 3.28
FOXN1O15353 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC35.56■■■■□ 3.28
FOXN1O15353 DYNLL1-208ENST00000550178 581 ntBASIC35.56■■■■□ 3.28
FOXN1O15353 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC35.55■■■■□ 3.28
FOXN1O15353 RPS2P35-201ENST00000443417 897 ntBASIC35.53■■■■□ 3.28
FOXN1O15353 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC35.51■■■■□ 3.28
FOXN1O15353 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC35.49■■■■□ 3.27
FOXN1O15353 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC35.47■■■■□ 3.27
FOXN1O15353 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC35.45■■■■□ 3.27
FOXN1O15353 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC35.41■■■■□ 3.26
FOXN1O15353 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC35.4■■■■□ 3.26
FOXN1O15353 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC35.39■■■■□ 3.26
FOXN1O15353 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC35.37■■■■□ 3.25
FOXN1O15353 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC35.36■■■■□ 3.25
FOXN1O15353 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC35.35■■■■□ 3.25
FOXN1O15353 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC35.32■■■■□ 3.24
FOXN1O15353 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC35.32■■■■□ 3.24
FOXN1O15353 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC35.28■■■■□ 3.24
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms