Protein–RNA interactions for Protein: A0A0B4J249

TRAV5, T-cell receptor alpha variable 5 (Fragment), humanhuman

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV5A0A0B4J249 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
TRAV5A0A0B4J249 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC25.84■■□□□ 1.73
TRAV5A0A0B4J249 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC25.8■■□□□ 1.72
TRAV5A0A0B4J249 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC25.48■■□□□ 1.67
TRAV5A0A0B4J249 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC25.45■■□□□ 1.67
TRAV5A0A0B4J249 HES6-203ENST00000409160 1600 ntTSL 2 BASIC25.37■■□□□ 1.65
TRAV5A0A0B4J249 AL356512.1-201ENST00000607453 1739 ntBASIC25.31■■□□□ 1.64
TRAV5A0A0B4J249 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC25.17■■□□□ 1.62
TRAV5A0A0B4J249 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC25.09■■□□□ 1.61
TRAV5A0A0B4J249 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
TRAV5A0A0B4J249 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC24.86■■□□□ 1.57
TRAV5A0A0B4J249 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC24.84■■□□□ 1.57
TRAV5A0A0B4J249 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
TRAV5A0A0B4J249 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC24.71■■□□□ 1.55
TRAV5A0A0B4J249 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
TRAV5A0A0B4J249 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC24.63■■□□□ 1.53
TRAV5A0A0B4J249 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC24.54■■□□□ 1.52
TRAV5A0A0B4J249 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
TRAV5A0A0B4J249 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC24.43■■□□□ 1.5
TRAV5A0A0B4J249 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
TRAV5A0A0B4J249 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
TRAV5A0A0B4J249 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC24.28■■□□□ 1.48
TRAV5A0A0B4J249 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
TRAV5A0A0B4J249 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC24.25■■□□□ 1.47
TRAV5A0A0B4J249 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.47
TRAV5A0A0B4J249 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
TRAV5A0A0B4J249 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC23.88■■□□□ 1.41
TRAV5A0A0B4J249 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC23.84■■□□□ 1.41
TRAV5A0A0B4J249 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
TRAV5A0A0B4J249 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
TRAV5A0A0B4J249 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC23.71■■□□□ 1.39
TRAV5A0A0B4J249 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC23.67■■□□□ 1.38
TRAV5A0A0B4J249 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC23.61■■□□□ 1.37
TRAV5A0A0B4J249 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
TRAV5A0A0B4J249 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC23.56■■□□□ 1.36
TRAV5A0A0B4J249 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC23.55■■□□□ 1.36
TRAV5A0A0B4J249 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC23.53■■□□□ 1.36
TRAV5A0A0B4J249 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC23.4■■□□□ 1.34
TRAV5A0A0B4J249 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
TRAV5A0A0B4J249 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
TRAV5A0A0B4J249 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
TRAV5A0A0B4J249 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
TRAV5A0A0B4J249 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
TRAV5A0A0B4J249 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
TRAV5A0A0B4J249 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.32
TRAV5A0A0B4J249 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
TRAV5A0A0B4J249 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
TRAV5A0A0B4J249 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC23.27■■□□□ 1.32
TRAV5A0A0B4J249 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
TRAV5A0A0B4J249 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
TRAV5A0A0B4J249 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
TRAV5A0A0B4J249 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
TRAV5A0A0B4J249 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
TRAV5A0A0B4J249 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC23.09■■□□□ 1.29
TRAV5A0A0B4J249 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC23.07■■□□□ 1.28
TRAV5A0A0B4J249 ILK-212ENST00000532063 1617 ntTSL 2 BASIC23.04■■□□□ 1.28
TRAV5A0A0B4J249 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC23.02■■□□□ 1.28
TRAV5A0A0B4J249 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC23■■□□□ 1.27
TRAV5A0A0B4J249 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC23■■□□□ 1.27
TRAV5A0A0B4J249 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
TRAV5A0A0B4J249 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
TRAV5A0A0B4J249 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC22.95■■□□□ 1.26
TRAV5A0A0B4J249 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC22.87■■□□□ 1.25
TRAV5A0A0B4J249 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC22.86■■□□□ 1.25
TRAV5A0A0B4J249 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC22.81■■□□□ 1.24
TRAV5A0A0B4J249 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
TRAV5A0A0B4J249 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
TRAV5A0A0B4J249 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
TRAV5A0A0B4J249 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
TRAV5A0A0B4J249 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC22.74■■□□□ 1.23
TRAV5A0A0B4J249 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC22.73■■□□□ 1.23
TRAV5A0A0B4J249 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
TRAV5A0A0B4J249 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
TRAV5A0A0B4J249 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC22.69■■□□□ 1.22
TRAV5A0A0B4J249 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC22.68■■□□□ 1.22
TRAV5A0A0B4J249 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
TRAV5A0A0B4J249 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC22.65■■□□□ 1.22
TRAV5A0A0B4J249 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC22.62■■□□□ 1.21
TRAV5A0A0B4J249 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC22.62■■□□□ 1.21
TRAV5A0A0B4J249 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
TRAV5A0A0B4J249 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
TRAV5A0A0B4J249 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
TRAV5A0A0B4J249 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC22.58■■□□□ 1.21
TRAV5A0A0B4J249 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
TRAV5A0A0B4J249 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC22.57■■□□□ 1.2
TRAV5A0A0B4J249 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
TRAV5A0A0B4J249 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
TRAV5A0A0B4J249 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC22.48■■□□□ 1.19
TRAV5A0A0B4J249 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC22.47■■□□□ 1.19
TRAV5A0A0B4J249 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC22.47■■□□□ 1.19
TRAV5A0A0B4J249 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC22.46■■□□□ 1.19
TRAV5A0A0B4J249 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC22.46■■□□□ 1.19
TRAV5A0A0B4J249 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC22.46■■□□□ 1.19
TRAV5A0A0B4J249 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
TRAV5A0A0B4J249 AC145285.7-201ENST00000614819 1539 ntBASIC22.41■■□□□ 1.18
TRAV5A0A0B4J249 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC22.41■■□□□ 1.18
TRAV5A0A0B4J249 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC22.4■■□□□ 1.18
TRAV5A0A0B4J249 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
TRAV5A0A0B4J249 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
TRAV5A0A0B4J249 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 13.5 ms