Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC30.49■■■□□ 2.47
DDX4Q9NQI0 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
DDX4Q9NQI0 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC30.48■■■□□ 2.47
DDX4Q9NQI0 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC30.48■■■□□ 2.47
DDX4Q9NQI0 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC30.48■■■□□ 2.47
DDX4Q9NQI0 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC30.48■■■□□ 2.47
DDX4Q9NQI0 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
DDX4Q9NQI0 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC30.48■■■□□ 2.47
DDX4Q9NQI0 RPS2-210ENST00000530225 765 ntTSL 2 BASIC30.48■■■□□ 2.47
DDX4Q9NQI0 AC148477.6-201ENST00000623746 465 ntBASIC30.48■■■□□ 2.47
DDX4Q9NQI0 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC30.48■■■□□ 2.47
DDX4Q9NQI0 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
DDX4Q9NQI0 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC30.47■■■□□ 2.47
DDX4Q9NQI0 ABHD17AP5-201ENST00000580133 923 ntBASIC30.46■■■□□ 2.47
DDX4Q9NQI0 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
DDX4Q9NQI0 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
DDX4Q9NQI0 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC30.45■■■□□ 2.47
DDX4Q9NQI0 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC30.44■■■□□ 2.46
DDX4Q9NQI0 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC30.44■■■□□ 2.46
DDX4Q9NQI0 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
DDX4Q9NQI0 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC30.43■■■□□ 2.46
DDX4Q9NQI0 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
DDX4Q9NQI0 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
DDX4Q9NQI0 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
DDX4Q9NQI0 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
DDX4Q9NQI0 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC30.42■■■□□ 2.46
DDX4Q9NQI0 MIR219A2-201ENST00000608502 1504 ntBASIC30.42■■■□□ 2.46
DDX4Q9NQI0 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC30.41■■■□□ 2.46
DDX4Q9NQI0 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
DDX4Q9NQI0 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
DDX4Q9NQI0 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC30.41■■■□□ 2.46
DDX4Q9NQI0 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC30.4■■■□□ 2.46
DDX4Q9NQI0 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC30.4■■■□□ 2.46
DDX4Q9NQI0 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
DDX4Q9NQI0 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
DDX4Q9NQI0 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC30.4■■■□□ 2.46
DDX4Q9NQI0 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
DDX4Q9NQI0 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC30.39■■■□□ 2.46
DDX4Q9NQI0 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.45
DDX4Q9NQI0 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
DDX4Q9NQI0 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
DDX4Q9NQI0 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC30.38■■■□□ 2.45
DDX4Q9NQI0 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC30.38■■■□□ 2.45
DDX4Q9NQI0 AC060814.1-201ENST00000554326 538 ntBASIC30.37■■■□□ 2.45
DDX4Q9NQI0 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
DDX4Q9NQI0 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC30.36■■■□□ 2.45
DDX4Q9NQI0 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC30.36■■■□□ 2.45
DDX4Q9NQI0 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC30.36■■■□□ 2.45
DDX4Q9NQI0 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
DDX4Q9NQI0 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
DDX4Q9NQI0 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
DDX4Q9NQI0 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
DDX4Q9NQI0 AC100797.4-201ENST00000631653 1827 ntBASIC30.33■■■□□ 2.45
DDX4Q9NQI0 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC30.33■■■□□ 2.45
DDX4Q9NQI0 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
DDX4Q9NQI0 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC30.32■■■□□ 2.45
DDX4Q9NQI0 AP004833.2-201ENST00000532228 1454 ntBASIC30.32■■■□□ 2.44
DDX4Q9NQI0 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
DDX4Q9NQI0 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC30.3■■■□□ 2.44
DDX4Q9NQI0 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
DDX4Q9NQI0 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
DDX4Q9NQI0 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC30.29■■■□□ 2.44
DDX4Q9NQI0 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC30.29■■■□□ 2.44
DDX4Q9NQI0 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC30.28■■■□□ 2.44
DDX4Q9NQI0 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC30.28■■■□□ 2.44
DDX4Q9NQI0 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC30.28■■■□□ 2.44
DDX4Q9NQI0 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC30.28■■■□□ 2.44
DDX4Q9NQI0 HES4-202ENST00000428771 1040 ntTSL 2 BASIC30.27■■■□□ 2.44
DDX4Q9NQI0 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
DDX4Q9NQI0 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
DDX4Q9NQI0 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
DDX4Q9NQI0 MED25-210ENST00000612854 801 ntTSL 5 BASIC30.26■■■□□ 2.43
DDX4Q9NQI0 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
DDX4Q9NQI0 MED25-214ENST00000622402 642 ntTSL 5 BASIC30.26■■■□□ 2.43
DDX4Q9NQI0 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC30.25■■■□□ 2.43
DDX4Q9NQI0 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC30.25■■■□□ 2.43
DDX4Q9NQI0 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC30.25■■■□□ 2.43
DDX4Q9NQI0 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC30.25■■■□□ 2.43
DDX4Q9NQI0 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC30.24■■■□□ 2.43
DDX4Q9NQI0 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
DDX4Q9NQI0 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
DDX4Q9NQI0 NTF6A-201ENST00000591175 560 ntBASIC30.22■■■□□ 2.43
DDX4Q9NQI0 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC30.21■■■□□ 2.43
DDX4Q9NQI0 AC092296.2-201ENST00000589470 999 ntBASIC30.21■■■□□ 2.43
DDX4Q9NQI0 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC30.21■■■□□ 2.43
DDX4Q9NQI0 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
DDX4Q9NQI0 AL139393.2-201ENST00000608721 2025 ntBASIC30.2■■■□□ 2.42
DDX4Q9NQI0 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC30.19■■■□□ 2.42
DDX4Q9NQI0 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC30.18■■■□□ 2.42
DDX4Q9NQI0 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC30.17■■■□□ 2.42
DDX4Q9NQI0 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC30.17■■■□□ 2.42
DDX4Q9NQI0 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC30.17■■■□□ 2.42
DDX4Q9NQI0 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC30.17■■■□□ 2.42
DDX4Q9NQI0 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC30.17■■■□□ 2.42
DDX4Q9NQI0 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
DDX4Q9NQI0 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC30.16■■■□□ 2.42
DDX4Q9NQI0 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
DDX4Q9NQI0 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
DDX4Q9NQI0 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
DDX4Q9NQI0 ST7-205ENST00000393446 2114 ntTSL 5 BASIC30.15■■■□□ 2.42
Retrieved 100 of 98,524 protein–RNA pairs in 71 ms