Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HOXD3P31249 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HOXD3P31249 MEST-211ENST00000437945 1455 ntTSL 5 BASIC19.67■□□□□ 0.74
HOXD3P31249 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HOXD3P31249 SRP68-213ENST00000629930 165 ntTSL 5 BASIC19.66■□□□□ 0.74
HOXD3P31249 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC19.66■□□□□ 0.74
HOXD3P31249 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC19.66■□□□□ 0.74
HOXD3P31249 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HOXD3P31249 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HOXD3P31249 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC19.65■□□□□ 0.74
HOXD3P31249 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HOXD3P31249 TPT1-202ENST00000379055 948 ntTSL 2 BASIC19.65■□□□□ 0.74
HOXD3P31249 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HOXD3P31249 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC19.65■□□□□ 0.74
HOXD3P31249 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.74
HOXD3P31249 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.73
HOXD3P31249 RARRES2P2-201ENST00000394842 485 ntBASIC19.64■□□□□ 0.73
HOXD3P31249 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC19.64■□□□□ 0.73
HOXD3P31249 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC19.64■□□□□ 0.73
HOXD3P31249 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC19.64■□□□□ 0.73
HOXD3P31249 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HOXD3P31249 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC19.64■□□□□ 0.73
HOXD3P31249 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC19.64■□□□□ 0.73
HOXD3P31249 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC19.63■□□□□ 0.73
HOXD3P31249 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
HOXD3P31249 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HOXD3P31249 GPX1-201ENST00000419349 1106 ntBASIC19.63■□□□□ 0.73
HOXD3P31249 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC19.63■□□□□ 0.73
HOXD3P31249 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HOXD3P31249 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HOXD3P31249 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HOXD3P31249 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
HOXD3P31249 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC19.62■□□□□ 0.73
HOXD3P31249 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC19.62■□□□□ 0.73
HOXD3P31249 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
HOXD3P31249 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
HOXD3P31249 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
HOXD3P31249 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC19.61■□□□□ 0.73
HOXD3P31249 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HOXD3P31249 CEP120-209ENST00000515110 606 ntTSL 3 BASIC19.6■□□□□ 0.73
HOXD3P31249 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC19.6■□□□□ 0.73
HOXD3P31249 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC19.6■□□□□ 0.73
HOXD3P31249 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
HOXD3P31249 AC100797.4-201ENST00000631653 1827 ntBASIC19.59■□□□□ 0.73
HOXD3P31249 AC110285.7-201ENST00000624417 1536 ntBASIC19.59■□□□□ 0.73
HOXD3P31249 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC19.59■□□□□ 0.73
HOXD3P31249 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
HOXD3P31249 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
HOXD3P31249 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
HOXD3P31249 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
HOXD3P31249 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
HOXD3P31249 ABCB10P3-201ENST00000561950 2166 ntBASIC19.58■□□□□ 0.72
HOXD3P31249 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
HOXD3P31249 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
HOXD3P31249 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC19.57■□□□□ 0.72
HOXD3P31249 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
HOXD3P31249 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC19.57■□□□□ 0.72
HOXD3P31249 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC19.57■□□□□ 0.72
HOXD3P31249 ABHD17AP5-201ENST00000580133 923 ntBASIC19.57■□□□□ 0.72
HOXD3P31249 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
HOXD3P31249 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HOXD3P31249 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HOXD3P31249 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
HOXD3P31249 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC19.56■□□□□ 0.72
HOXD3P31249 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
HOXD3P31249 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HOXD3P31249 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
HOXD3P31249 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC19.56■□□□□ 0.72
HOXD3P31249 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HOXD3P31249 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC19.55■□□□□ 0.72
HOXD3P31249 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC19.55■□□□□ 0.72
HOXD3P31249 AC139426.1-201ENST00000568218 2529 ntBASIC19.55■□□□□ 0.72
HOXD3P31249 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC19.54■□□□□ 0.72
HOXD3P31249 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HOXD3P31249 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HOXD3P31249 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
HOXD3P31249 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HOXD3P31249 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
HOXD3P31249 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HOXD3P31249 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HOXD3P31249 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC19.53■□□□□ 0.72
HOXD3P31249 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
HOXD3P31249 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
HOXD3P31249 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC19.52■□□□□ 0.72
HOXD3P31249 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
HOXD3P31249 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC19.52■□□□□ 0.72
HOXD3P31249 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC19.52■□□□□ 0.71
HOXD3P31249 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.71
HOXD3P31249 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
HOXD3P31249 RNF126P1-201ENST00000567452 1320 ntBASIC19.51■□□□□ 0.71
HOXD3P31249 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HOXD3P31249 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
HOXD3P31249 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HOXD3P31249 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
HOXD3P31249 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HOXD3P31249 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC19.5■□□□□ 0.71
HOXD3P31249 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HOXD3P31249 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
HOXD3P31249 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HOXD3P31249 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms