Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
MMP28Q9H239 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
MMP28Q9H239 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
MMP28Q9H239 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
MMP28Q9H239 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
MMP28Q9H239 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
MMP28Q9H239 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC22.64■■□□□ 1.21
MMP28Q9H239 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
MMP28Q9H239 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC22.64■■□□□ 1.21
MMP28Q9H239 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
MMP28Q9H239 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
MMP28Q9H239 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
MMP28Q9H239 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
MMP28Q9H239 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
MMP28Q9H239 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
MMP28Q9H239 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC22.62■■□□□ 1.21
MMP28Q9H239 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC22.62■■□□□ 1.21
MMP28Q9H239 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
MMP28Q9H239 AL449106.1-201ENST00000608517 1980 ntBASIC22.61■■□□□ 1.21
MMP28Q9H239 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
MMP28Q9H239 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
MMP28Q9H239 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
MMP28Q9H239 AL135925.1-201ENST00000605920 1701 ntBASIC22.61■■□□□ 1.21
MMP28Q9H239 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC22.6■■□□□ 1.21
MMP28Q9H239 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC22.6■■□□□ 1.21
MMP28Q9H239 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
MMP28Q9H239 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
MMP28Q9H239 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
MMP28Q9H239 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC22.59■■□□□ 1.21
MMP28Q9H239 AL139393.2-201ENST00000608721 2025 ntBASIC22.58■■□□□ 1.21
MMP28Q9H239 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC22.58■■□□□ 1.21
MMP28Q9H239 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
MMP28Q9H239 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
MMP28Q9H239 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
MMP28Q9H239 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC22.57■■□□□ 1.2
MMP28Q9H239 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
MMP28Q9H239 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC22.57■■□□□ 1.2
MMP28Q9H239 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC22.56■■□□□ 1.2
MMP28Q9H239 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
MMP28Q9H239 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
MMP28Q9H239 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
MMP28Q9H239 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC22.55■■□□□ 1.2
MMP28Q9H239 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC22.55■■□□□ 1.2
MMP28Q9H239 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
MMP28Q9H239 PKM-203ENST00000389093 2279 ntTSL 5 BASIC22.55■■□□□ 1.2
MMP28Q9H239 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
MMP28Q9H239 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
MMP28Q9H239 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC22.54■■□□□ 1.2
MMP28Q9H239 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC22.54■■□□□ 1.2
MMP28Q9H239 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC22.54■■□□□ 1.2
MMP28Q9H239 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
MMP28Q9H239 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC22.53■■□□□ 1.2
MMP28Q9H239 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC22.53■■□□□ 1.2
MMP28Q9H239 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
MMP28Q9H239 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
MMP28Q9H239 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
MMP28Q9H239 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC22.52■■□□□ 1.2
MMP28Q9H239 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
MMP28Q9H239 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC22.52■■□□□ 1.2
MMP28Q9H239 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC22.52■■□□□ 1.2
MMP28Q9H239 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
MMP28Q9H239 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC22.52■■□□□ 1.2
MMP28Q9H239 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
MMP28Q9H239 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC22.51■■□□□ 1.19
MMP28Q9H239 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
MMP28Q9H239 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
MMP28Q9H239 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC22.5■■□□□ 1.19
MMP28Q9H239 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC22.5■■□□□ 1.19
MMP28Q9H239 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
MMP28Q9H239 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC22.49■■□□□ 1.19
MMP28Q9H239 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC22.49■■□□□ 1.19
MMP28Q9H239 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
MMP28Q9H239 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
MMP28Q9H239 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
MMP28Q9H239 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
MMP28Q9H239 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC22.46■■□□□ 1.19
MMP28Q9H239 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
MMP28Q9H239 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
MMP28Q9H239 SNAI3-AS1-204ENST00000567997 2048 ntBASIC22.46■■□□□ 1.19
MMP28Q9H239 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC22.45■■□□□ 1.18
MMP28Q9H239 KLF16-203ENST00000592313 508 ntTSL 3 BASIC22.45■■□□□ 1.18
MMP28Q9H239 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
MMP28Q9H239 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC22.44■■□□□ 1.18
MMP28Q9H239 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC22.44■■□□□ 1.18
MMP28Q9H239 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC22.43■■□□□ 1.18
MMP28Q9H239 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
MMP28Q9H239 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
MMP28Q9H239 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
MMP28Q9H239 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
MMP28Q9H239 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
MMP28Q9H239 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
MMP28Q9H239 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC22.42■■□□□ 1.18
MMP28Q9H239 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
MMP28Q9H239 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC22.41■■□□□ 1.18
MMP28Q9H239 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
MMP28Q9H239 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
MMP28Q9H239 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
MMP28Q9H239 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC22.39■■□□□ 1.17
MMP28Q9H239 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
MMP28Q9H239 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC22.38■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 9.5 ms