RNA–Protein interactions for RNA: ENST00000355560.4

CLK2-201, Transcript of CDC like kinase 2, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene CLK2, Length 2,120 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK2-201ENST00000355560 NISCHQ9Y2I1 1504 aa57.33■■■■■ 6.77
CLK2-201ENST00000355560 CCDC180Q9P1Z9 1646 aa49.77■■■■■ 5.56
CLK2-201ENST00000355560 ZCCHC6Q5VYS8 1495 aaKnown RBP48.25■■■■■ 5.31
CLK2-201ENST00000355560 DCAF8L2P0C7V8 631 aa47.36■■■■■ 5.17
CLK2-201ENST00000355560 DCAF1Q9Y4B6 1507 aa47.32■■■■■ 5.17
CLK2-201ENST00000355560 SHROOM4Q9ULL8 1493 aa47.2■■■■■ 5.15
CLK2-201ENST00000355560 ABCC9O60706 1549 aa46.85■■■■■ 5.09
CLK2-201ENST00000355560 MYO15BQ96JP2 1530 aa46.6■■■■■ 5.05
CLK2-201ENST00000355560 NACADO15069 1562 aa46.26■■■■■ 5
CLK2-201ENST00000355560 SCRIBQ14160 1630 aa45.96■■■■■ 4.95
CLK2-201ENST00000355560 RB1CC1Q8TDY2 1594 aa45.8■■■■■ 4.92
CLK2-201ENST00000355560 SUPT5HO00267 1087 aaKnown RBP45.58■■■■■ 4.89
CLK2-201ENST00000355560 UNC13AQ9UPW8 1703 aa44.98■■■■■ 4.79
CLK2-201ENST00000355560 RSF1Q96T23 1441 aaPredicted RBP44.64■■■■■ 4.74
CLK2-201ENST00000355560 CECR2Q9BXF3 1484 aa44.58■■■■■ 4.73
CLK2-201ENST00000355560 BICRAQ9NZM4 1560 aa44.45■■■■■ 4.71
CLK2-201ENST00000355560 MROH2BQ7Z745 1585 aa44.36■■■■■ 4.69
CLK2-201ENST00000355560 PABPN1Q86U42 306 aaKnown RBP eCLIP44.27■■■■■ 4.682e-6■□□□□ 11.1
CLK2-201ENST00000355560 BAZ1AQ9NRL2 1556 aaPredicted RBP44.24■■■■■ 4.67
CLK2-201ENST00000355560 WIZO95785 1651 aa44.04■■■■■ 4.64
CLK2-201ENST00000355560 SMARCA4P51532 1647 aa44.02■■■■■ 4.64
CLK2-201ENST00000355560 CHIC1Q5VXU3 224 aa43.75■■■■■ 4.59
CLK2-201ENST00000355560 TOP2AP11388 1531 aaKnown RBP43.53■■■■■ 4.56
CLK2-201ENST00000355560 PEG3Q9GZU2 1588 aa43.4■■■■■ 4.54
CLK2-201ENST00000355560 ATAD2BQ9ULI0 1458 aa43.18■■■■■ 4.5
CLK2-201ENST00000355560 SMARCA2P51531 1590 aa43.16■■■■■ 4.5
CLK2-201ENST00000355560 CCDC88BA6NC98 1476 aa43.11■■■■■ 4.49
CLK2-201ENST00000355560 EIF4G1Q04637 1599 aaKnown RBP43.09■■■■■ 4.49
CLK2-201ENST00000355560 BAZ1BQ9UIG0 1483 aaKnown RBP42.99■■■■■ 4.47
CLK2-201ENST00000355560 TRIM41Q8WV44 630 aa42.76■■■■■ 4.44
CLK2-201ENST00000355560 NCAPD3P42695 1498 aa42.7■■■■■ 4.43
CLK2-201ENST00000355560 HMGXB3Q12766 1538 aa42.69■■■■■ 4.42
CLK2-201ENST00000355560 ABCC8Q09428 1581 aa42.41■■■■■ 4.38
CLK2-201ENST00000355560 CC2D2AQ9P2K1 1620 aa42.37■■■■■ 4.37
CLK2-201ENST00000355560 LOC105371045A0A1W2PR82 267 aa42.16■■■■■ 4.34
CLK2-201ENST00000355560 FAM9AQ8IZU1 332 aaPredicted RBP42.08■■■■■ 4.33
CLK2-201ENST00000355560 WRNQ14191 1432 aaPredicted RBP eCLIP42.02■■■■■ 4.32
CLK2-201ENST00000355560 CFTRP13569 1480 aa41.89■■■■■ 4.3
CLK2-201ENST00000355560 SYNJ1O43426 1573 aa41.87■■■■■ 4.29
CLK2-201ENST00000355560 PRDM2Q13029 1718 aa41.71■■■■■ 4.27
CLK2-201ENST00000355560 SOGA1O94964 1423 aa41.66■■■■■ 4.26
CLK2-201ENST00000355560 CADPSQ9ULU8 1353 aa41.66■■■■■ 4.26
CLK2-201ENST00000355560 TOP2BQ02880 1626 aa41.62■■■■■ 4.25
CLK2-201ENST00000355560 BIVM-ERCC5R4GMW8 1640 aa41.56■■■■■ 4.24
CLK2-201ENST00000355560 EEA1Q15075 1411 aa41.55■■■■■ 4.24
CLK2-201ENST00000355560 EHMT2Q96KQ7 1210 aa41.55■■■■■ 4.24
CLK2-201ENST00000355560 RUSC2Q8N2Y8 1516 aa41.5■■■■■ 4.23
CLK2-201ENST00000355560 CUX1P39880 1505 aa41.44■■■■■ 4.22
CLK2-201ENST00000355560 CSRNP3Q8WYN3 585 aa41.33■■■■■ 4.21
CLK2-201ENST00000355560 NESP48681 1621 aa41.26■■■■■ 4.2
CLK2-201ENST00000355560 DNAJC5BQ9UF47 199 aa41.25■■■■■ 4.19
CLK2-201ENST00000355560 FANCD2Q9BXW9 1451 aa41.24■■■■■ 4.19
CLK2-201ENST00000355560 LAMC3Q9Y6N6 1575 aa41.21■■■■■ 4.19
CLK2-201ENST00000355560 GOLGA3Q08378 1498 aa41.06■■■■■ 4.16
CLK2-201ENST00000355560 KIF21BO75037 1637 aa41.04■■■■■ 4.16
CLK2-201ENST00000355560 CEP164Q9UPV0 1460 aa41.02■■■■■ 4.16
CLK2-201ENST00000355560 TNIKQ9UKE5 1360 aa40.97■■■■■ 4.15
CLK2-201ENST00000355560 FGD5Q6ZNL6 1462 aa40.94■■■■■ 4.14
CLK2-201ENST00000355560 DNMBPQ6XZF7 1577 aa40.92■■■■■ 4.14
CLK2-201ENST00000355560 KIF27Q86VH2 1401 aa40.91■■■■■ 4.14
CLK2-201ENST00000355560 UBTFP17480 764 aaKnown RBP40.9■■■■■ 4.14
CLK2-201ENST00000355560 PDS5BQ9NTI5 1447 aa40.88■■■■■ 4.13
CLK2-201ENST00000355560 CEP162Q5TB80 1403 aa40.85■■■■■ 4.13
CLK2-201ENST00000355560 TOPBP1Q92547 1522 aa40.84■■■■■ 4.13
CLK2-201ENST00000355560 RAPGEF2Q9Y4G8 1499 aa40.8■■■■■ 4.12
CLK2-201ENST00000355560 KIF21AQ7Z4S6 1674 aa40.76■■■■■ 4.12
CLK2-201ENST00000355560 CUX2O14529 1486 aa40.75■■■■■ 4.11
CLK2-201ENST00000355560 PRXQ9BXM0 1461 aa40.72■■■■■ 4.11
CLK2-201ENST00000355560 URB2Q14146 1524 aaKnown RBP40.71■■■■■ 4.11
CLK2-201ENST00000355560 ERICH3Q5RHP9 1530 aa40.68■■■■■ 4.1
CLK2-201ENST00000355560 POLA1P09884 1462 aaPredicted RBP40.68■■■■■ 4.1
CLK2-201ENST00000355560 PCGF6Q9BYE7 350 aa40.64■■■■■ 4.1
CLK2-201ENST00000355560 RAD54L2Q9Y4B4 1467 aa40.58■■■■■ 4.09
CLK2-201ENST00000355560 ABCA10Q8WWZ4 1543 aa40.54■■■■■ 4.08
CLK2-201ENST00000355560 IGF1RP08069 1367 aa40.49■■■■■ 4.07
CLK2-201ENST00000355560 TRIM26Q12899 539 aaPredicted RBP40.46■■■■■ 4.07
CLK2-201ENST00000355560 CLIP1P30622 1438 aa40.43■■■■■ 4.06
CLK2-201ENST00000355560 WDR97A6NE52 1622 aa40.4■■■■■ 4.06
CLK2-201ENST00000355560 MRC2Q9UBG0 1479 aa40.35■■■■■ 4.05
CLK2-201ENST00000355560 CARMIL1Q5VZK9 1371 aa40.31■■■■■ 4.04
CLK2-201ENST00000355560 RANGAP1P46060 587 aaPredicted RBP40.22■■■■■ 4.03
CLK2-201ENST00000355560 PPARGC1BQ86YN6 1023 aaKnown RBP40.21■■■■■ 4.03
CLK2-201ENST00000355560 ABCA5Q8WWZ7 1642 aa40.2■■■■■ 4.03
CLK2-201ENST00000355560 TARBP1Q13395 1621 aaKnown RBP40.18■■■■■ 4.02
CLK2-201ENST00000355560 CUL7Q14999 1698 aa40.15■■■■■ 4.02
CLK2-201ENST00000355560 TDRD9Q8NDG6 1382 aaKnown RBP40.15■■■■■ 4.02
CLK2-201ENST00000355560 WDR62O43379 1518 aa40.13■■■■■ 4.01
CLK2-201ENST00000355560 VPS8Q8N3P4 1428 aa40.12■■■■■ 4.01
CLK2-201ENST00000355560 ERCC6Q03468 1493 aa40.12■■■■■ 4.01
CLK2-201ENST00000355560 GAPVD1Q14C86 1478 aa40.1■■■■■ 4.01
CLK2-201ENST00000355560 ARAP1Q96P48 1450 aa39.99■■■■□ 3.99
CLK2-201ENST00000355560 THOC2Q8NI27 1593 aaKnown RBP39.94■■■■□ 3.98
CLK2-201ENST00000355560 ARHGAP35Q9NRY4 1499 aa39.91■■■■□ 3.98
CLK2-201ENST00000355560 IFT140Q96RY7 1462 aa39.9■■■■□ 3.98
CLK2-201ENST00000355560 PBRM1Q86U86 1689 aa39.87■■■■□ 3.97
CLK2-201ENST00000355560 TTBK1Q5TCY1 1321 aaPredicted RBP39.86■■■■□ 3.97
CLK2-201ENST00000355560 AQRO60306 1485 aaKnown RBP eCLIP39.83■■■■□ 3.975e-7■■■■■ 28
CLK2-201ENST00000355560 CTTNBP2Q8WZ74 1663 aa39.8■■■■□ 3.96
CLK2-201ENST00000355560 ZNF608Q9ULD9 1512 aaPredicted RBP39.75■■■■□ 3.95
CLK2-201ENST00000355560 APLP2Q06481 763 aa39.74■■■■□ 3.95
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms