Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC25.01■■□□□ 1.59
COL28A1Q2UY09 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC25.01■■□□□ 1.59
COL28A1Q2UY09 CEP120-209ENST00000515110 606 ntTSL 3 BASIC25■■□□□ 1.59
COL28A1Q2UY09 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
COL28A1Q2UY09 AL033527.3-201ENST00000566366 1196 ntBASIC24.99■■□□□ 1.59
COL28A1Q2UY09 AC120057.4-201ENST00000624722 1615 ntBASIC24.99■■□□□ 1.59
COL28A1Q2UY09 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
COL28A1Q2UY09 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC24.98■■□□□ 1.59
COL28A1Q2UY09 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC24.98■■□□□ 1.59
COL28A1Q2UY09 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC24.98■■□□□ 1.59
COL28A1Q2UY09 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
COL28A1Q2UY09 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC24.98■■□□□ 1.59
COL28A1Q2UY09 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC24.98■■□□□ 1.59
COL28A1Q2UY09 CHML-204ENST00000638121 920 ntTSL 2 BASIC24.98■■□□□ 1.59
COL28A1Q2UY09 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
COL28A1Q2UY09 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC24.98■■□□□ 1.59
COL28A1Q2UY09 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
COL28A1Q2UY09 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
COL28A1Q2UY09 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC24.97■■□□□ 1.59
COL28A1Q2UY09 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
COL28A1Q2UY09 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
COL28A1Q2UY09 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
COL28A1Q2UY09 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
COL28A1Q2UY09 AC008813.1-201ENST00000536597 885 ntBASIC24.96■■□□□ 1.59
COL28A1Q2UY09 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
COL28A1Q2UY09 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC24.95■■□□□ 1.58
COL28A1Q2UY09 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
COL28A1Q2UY09 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
COL28A1Q2UY09 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC24.94■■□□□ 1.58
COL28A1Q2UY09 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
COL28A1Q2UY09 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
COL28A1Q2UY09 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
COL28A1Q2UY09 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC24.93■■□□□ 1.58
COL28A1Q2UY09 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
COL28A1Q2UY09 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
COL28A1Q2UY09 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC24.91■■□□□ 1.58
COL28A1Q2UY09 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
COL28A1Q2UY09 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
COL28A1Q2UY09 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC24.9■■□□□ 1.58
COL28A1Q2UY09 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC24.9■■□□□ 1.58
COL28A1Q2UY09 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
COL28A1Q2UY09 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
COL28A1Q2UY09 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC24.89■■□□□ 1.58
COL28A1Q2UY09 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
COL28A1Q2UY09 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC24.88■■□□□ 1.57
COL28A1Q2UY09 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC24.88■■□□□ 1.57
COL28A1Q2UY09 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC24.88■■□□□ 1.57
COL28A1Q2UY09 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC24.87■■□□□ 1.57
COL28A1Q2UY09 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
COL28A1Q2UY09 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC24.87■■□□□ 1.57
COL28A1Q2UY09 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
COL28A1Q2UY09 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC24.86■■□□□ 1.57
COL28A1Q2UY09 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC24.85■■□□□ 1.57
COL28A1Q2UY09 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC24.85■■□□□ 1.57
COL28A1Q2UY09 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC24.85■■□□□ 1.57
COL28A1Q2UY09 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC24.84■■□□□ 1.57
COL28A1Q2UY09 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
COL28A1Q2UY09 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC24.84■■□□□ 1.57
COL28A1Q2UY09 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
COL28A1Q2UY09 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC24.83■■□□□ 1.57
COL28A1Q2UY09 CHST11-202ENST00000546689 756 ntTSL 2 BASIC24.83■■□□□ 1.57
COL28A1Q2UY09 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC24.83■■□□□ 1.57
COL28A1Q2UY09 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC24.81■■□□□ 1.56
COL28A1Q2UY09 AC022413.1-201ENST00000624602 984 ntBASIC24.81■■□□□ 1.56
COL28A1Q2UY09 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC24.81■■□□□ 1.56
COL28A1Q2UY09 AC019069.1-201ENST00000610008 1333 ntBASIC24.81■■□□□ 1.56
COL28A1Q2UY09 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
COL28A1Q2UY09 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC24.79■■□□□ 1.56
COL28A1Q2UY09 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC24.79■■□□□ 1.56
COL28A1Q2UY09 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
COL28A1Q2UY09 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
COL28A1Q2UY09 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
COL28A1Q2UY09 RARRES2P1-201ENST00000474487 481 ntBASIC24.77■■□□□ 1.56
COL28A1Q2UY09 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC24.76■■□□□ 1.55
COL28A1Q2UY09 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
COL28A1Q2UY09 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC24.75■■□□□ 1.55
COL28A1Q2UY09 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
COL28A1Q2UY09 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC24.74■■□□□ 1.55
COL28A1Q2UY09 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
COL28A1Q2UY09 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC24.74■■□□□ 1.55
COL28A1Q2UY09 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
COL28A1Q2UY09 HES4-202ENST00000428771 1040 ntTSL 2 BASIC24.73■■□□□ 1.55
COL28A1Q2UY09 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
COL28A1Q2UY09 GFER-205ENST00000569451 517 ntTSL 5 BASIC24.72■■□□□ 1.55
COL28A1Q2UY09 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
COL28A1Q2UY09 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
COL28A1Q2UY09 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC24.7■■□□□ 1.54
COL28A1Q2UY09 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
COL28A1Q2UY09 EI24-212ENST00000615917 1407 ntTSL 2 BASIC24.69■■□□□ 1.54
COL28A1Q2UY09 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC24.69■■□□□ 1.54
COL28A1Q2UY09 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
COL28A1Q2UY09 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC24.69■■□□□ 1.54
COL28A1Q2UY09 U85056.1-201ENST00000616429 682 ntBASIC24.69■■□□□ 1.54
COL28A1Q2UY09 MTURN-203ENST00000409688 843 ntTSL 2 BASIC24.68■■□□□ 1.54
COL28A1Q2UY09 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
COL28A1Q2UY09 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC24.68■■□□□ 1.54
COL28A1Q2UY09 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC24.68■■□□□ 1.54
COL28A1Q2UY09 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
COL28A1Q2UY09 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC24.67■■□□□ 1.54
COL28A1Q2UY09 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC24.66■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 10.1 ms