Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC32.7■■■□□ 2.83
COL28A1Q2UY09 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC32.39■■■□□ 2.78
COL28A1Q2UY09 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC32.22■■■□□ 2.75
COL28A1Q2UY09 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC31.56■■■□□ 2.64
COL28A1Q2UY09 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
COL28A1Q2UY09 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
COL28A1Q2UY09 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC31.26■■■□□ 2.59
COL28A1Q2UY09 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
COL28A1Q2UY09 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC31.23■■■□□ 2.59
COL28A1Q2UY09 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
COL28A1Q2UY09 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
COL28A1Q2UY09 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC30.78■■■□□ 2.52
COL28A1Q2UY09 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
COL28A1Q2UY09 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC30.75■■■□□ 2.51
COL28A1Q2UY09 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC30.66■■■□□ 2.5
COL28A1Q2UY09 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC30.64■■■□□ 2.5
COL28A1Q2UY09 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
COL28A1Q2UY09 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC30.4■■■□□ 2.46
COL28A1Q2UY09 AL356512.1-201ENST00000607453 1739 ntBASIC30.36■■■□□ 2.45
COL28A1Q2UY09 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC30.3■■■□□ 2.44
COL28A1Q2UY09 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
COL28A1Q2UY09 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
COL28A1Q2UY09 ZNRF2P1-201ENST00000441407 443 ntBASIC30.16■■■□□ 2.42
COL28A1Q2UY09 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC30.15■■■□□ 2.42
COL28A1Q2UY09 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
COL28A1Q2UY09 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC30.08■■■□□ 2.41
COL28A1Q2UY09 AC006077.2-201ENST00000623591 457 ntBASIC30.05■■■□□ 2.4
COL28A1Q2UY09 INO80B-203ENST00000409917 796 ntTSL 2 BASIC30.03■■■□□ 2.4
COL28A1Q2UY09 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC29.99■■■□□ 2.39
COL28A1Q2UY09 HES6-203ENST00000409160 1600 ntTSL 2 BASIC29.92■■■□□ 2.38
COL28A1Q2UY09 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC29.9■■■□□ 2.38
COL28A1Q2UY09 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
COL28A1Q2UY09 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC29.66■■■□□ 2.34
COL28A1Q2UY09 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC29.65■■■□□ 2.34
COL28A1Q2UY09 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC29.59■■■□□ 2.33
COL28A1Q2UY09 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC29.51■■■□□ 2.31
COL28A1Q2UY09 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC29.46■■■□□ 2.31
COL28A1Q2UY09 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC29.46■■■□□ 2.31
COL28A1Q2UY09 AC015813.7-201ENST00000623294 581 ntBASIC29.42■■■□□ 2.3
COL28A1Q2UY09 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC29.41■■■□□ 2.3
COL28A1Q2UY09 AP002365.1-201ENST00000603448 772 ntBASIC29.39■■■□□ 2.3
COL28A1Q2UY09 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC29.28■■■□□ 2.28
COL28A1Q2UY09 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC29.24■■■□□ 2.27
COL28A1Q2UY09 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
COL28A1Q2UY09 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC29.18■■■□□ 2.26
COL28A1Q2UY09 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
COL28A1Q2UY09 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC29.1■■■□□ 2.25
COL28A1Q2UY09 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC29.08■■■□□ 2.25
COL28A1Q2UY09 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
COL28A1Q2UY09 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
COL28A1Q2UY09 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC28.99■■■□□ 2.23
COL28A1Q2UY09 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC28.98■■■□□ 2.23
COL28A1Q2UY09 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC28.97■■■□□ 2.23
COL28A1Q2UY09 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC28.95■■■□□ 2.22
COL28A1Q2UY09 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC28.94■■■□□ 2.22
COL28A1Q2UY09 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC28.89■■■□□ 2.22
COL28A1Q2UY09 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC28.85■■■□□ 2.21
COL28A1Q2UY09 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC28.77■■■□□ 2.2
COL28A1Q2UY09 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC28.75■■■□□ 2.19
COL28A1Q2UY09 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
COL28A1Q2UY09 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
COL28A1Q2UY09 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
COL28A1Q2UY09 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC28.64■■■□□ 2.18
COL28A1Q2UY09 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC28.61■■■□□ 2.17
COL28A1Q2UY09 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
COL28A1Q2UY09 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC28.6■■■□□ 2.17
COL28A1Q2UY09 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC28.6■■■□□ 2.17
COL28A1Q2UY09 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
COL28A1Q2UY09 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC28.54■■■□□ 2.16
COL28A1Q2UY09 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC28.51■■■□□ 2.15
COL28A1Q2UY09 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC28.49■■■□□ 2.15
COL28A1Q2UY09 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC28.49■■■□□ 2.15
COL28A1Q2UY09 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
COL28A1Q2UY09 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC28.44■■■□□ 2.14
COL28A1Q2UY09 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC28.43■■■□□ 2.14
COL28A1Q2UY09 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC28.4■■■□□ 2.14
COL28A1Q2UY09 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.13
COL28A1Q2UY09 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC28.38■■■□□ 2.13
COL28A1Q2UY09 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC28.38■■■□□ 2.13
COL28A1Q2UY09 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC28.37■■■□□ 2.13
COL28A1Q2UY09 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC28.37■■■□□ 2.13
COL28A1Q2UY09 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC28.37■■■□□ 2.13
COL28A1Q2UY09 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC28.34■■■□□ 2.13
COL28A1Q2UY09 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
COL28A1Q2UY09 DYNLL1-208ENST00000550178 581 ntBASIC28.32■■■□□ 2.12
COL28A1Q2UY09 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC28.3■■■□□ 2.12
COL28A1Q2UY09 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC28.3■■■□□ 2.12
COL28A1Q2UY09 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
COL28A1Q2UY09 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC28.28■■■□□ 2.12
COL28A1Q2UY09 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
COL28A1Q2UY09 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC28.26■■■□□ 2.11
COL28A1Q2UY09 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
COL28A1Q2UY09 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC28.23■■■□□ 2.11
COL28A1Q2UY09 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC28.23■■■□□ 2.11
COL28A1Q2UY09 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
COL28A1Q2UY09 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC28.2■■■□□ 2.1
COL28A1Q2UY09 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
COL28A1Q2UY09 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
COL28A1Q2UY09 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC28.17■■■□□ 2.1
COL28A1Q2UY09 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms