Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
PRKDCP78527 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PRKDCP78527 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PRKDCP78527 KRT18P60-201ENST00000312876 1297 ntBASIC19.52■□□□□ 0.71
PRKDCP78527 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
PRKDCP78527 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC19.52■□□□□ 0.71
PRKDCP78527 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
PRKDCP78527 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC19.51■□□□□ 0.71
PRKDCP78527 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
PRKDCP78527 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
PRKDCP78527 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PRKDCP78527 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PRKDCP78527 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
PRKDCP78527 CHST11-202ENST00000546689 756 ntTSL 2 BASIC19.49■□□□□ 0.71
PRKDCP78527 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PRKDCP78527 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC19.49■□□□□ 0.71
PRKDCP78527 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC19.49■□□□□ 0.71
PRKDCP78527 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PRKDCP78527 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PRKDCP78527 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC19.49■□□□□ 0.71
PRKDCP78527 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PRKDCP78527 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC19.47■□□□□ 0.71
PRKDCP78527 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
PRKDCP78527 AC022413.1-201ENST00000624602 984 ntBASIC19.47■□□□□ 0.71
PRKDCP78527 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PRKDCP78527 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
PRKDCP78527 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
PRKDCP78527 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC19.46■□□□□ 0.71
PRKDCP78527 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PRKDCP78527 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC19.45■□□□□ 0.7
PRKDCP78527 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC19.44■□□□□ 0.7
PRKDCP78527 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC19.44■□□□□ 0.7
PRKDCP78527 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
PRKDCP78527 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PRKDCP78527 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PRKDCP78527 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
PRKDCP78527 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC19.42■□□□□ 0.7
PRKDCP78527 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PRKDCP78527 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC19.41■□□□□ 0.7
PRKDCP78527 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
PRKDCP78527 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PRKDCP78527 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC19.4■□□□□ 0.7
PRKDCP78527 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
PRKDCP78527 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PRKDCP78527 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC19.38■□□□□ 0.69
PRKDCP78527 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC19.38■□□□□ 0.69
PRKDCP78527 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC19.38■□□□□ 0.69
PRKDCP78527 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
PRKDCP78527 AC060814.1-201ENST00000554326 538 ntBASIC19.37■□□□□ 0.69
PRKDCP78527 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC19.37■□□□□ 0.69
PRKDCP78527 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC19.37■□□□□ 0.69
PRKDCP78527 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PRKDCP78527 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC19.37■□□□□ 0.69
PRKDCP78527 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PRKDCP78527 HES4-202ENST00000428771 1040 ntTSL 2 BASIC19.36■□□□□ 0.69
PRKDCP78527 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
PRKDCP78527 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PRKDCP78527 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
PRKDCP78527 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC19.34■□□□□ 0.69
PRKDCP78527 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PRKDCP78527 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC19.34■□□□□ 0.69
PRKDCP78527 EI24-212ENST00000615917 1407 ntTSL 2 BASIC19.34■□□□□ 0.69
PRKDCP78527 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
PRKDCP78527 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
PRKDCP78527 HES4-204ENST00000484667 667 ntTSL 3 BASIC19.33■□□□□ 0.68
PRKDCP78527 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
PRKDCP78527 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PRKDCP78527 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC19.32■□□□□ 0.68
PRKDCP78527 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PRKDCP78527 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC19.31■□□□□ 0.68
PRKDCP78527 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PRKDCP78527 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PRKDCP78527 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PRKDCP78527 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
PRKDCP78527 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC19.29■□□□□ 0.68
PRKDCP78527 LINC00273-201ENST00000539813 1452 ntBASIC19.29■□□□□ 0.68
PRKDCP78527 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PRKDCP78527 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC19.28■□□□□ 0.68
PRKDCP78527 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PRKDCP78527 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
PRKDCP78527 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PRKDCP78527 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
PRKDCP78527 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PRKDCP78527 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PRKDCP78527 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC19.27■□□□□ 0.68
PRKDCP78527 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC19.27■□□□□ 0.67
PRKDCP78527 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.67
PRKDCP78527 AC131212.1-201ENST00000613771 668 ntBASIC19.27■□□□□ 0.67
PRKDCP78527 THA1P-201ENST00000590384 1145 ntBASIC19.26■□□□□ 0.67
PRKDCP78527 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PRKDCP78527 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PRKDCP78527 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC19.26■□□□□ 0.67
PRKDCP78527 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
PRKDCP78527 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PRKDCP78527 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC19.25■□□□□ 0.67
PRKDCP78527 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PRKDCP78527 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PRKDCP78527 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PRKDCP78527 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
PRKDCP78527 AC009299.2-201ENST00000482477 511 ntBASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms