Protein–RNA interactions for Protein: Q9Y5H9

PCDHA2, Protocadherin alpha-2, humanhuman

Predictions only

Length 948 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA2Q9Y5H9 PVT1-219ENST00000523427 938 ntTSL 3 BASIC29.64■■■□□ 2.34
PCDHA2Q9Y5H9 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC29.64■■■□□ 2.33
PCDHA2Q9Y5H9 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC29.63■■■□□ 2.33
PCDHA2Q9Y5H9 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC29.63■■■□□ 2.33
PCDHA2Q9Y5H9 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC29.63■■■□□ 2.33
PCDHA2Q9Y5H9 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC29.63■■■□□ 2.33
PCDHA2Q9Y5H9 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
PCDHA2Q9Y5H9 DUX4L29-201ENST00000425409 679 ntBASIC29.62■■■□□ 2.33
PCDHA2Q9Y5H9 AC108673.1-201ENST00000510422 1159 ntBASIC29.62■■■□□ 2.33
PCDHA2Q9Y5H9 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
PCDHA2Q9Y5H9 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
PCDHA2Q9Y5H9 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
PCDHA2Q9Y5H9 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
PCDHA2Q9Y5H9 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC29.61■■■□□ 2.33
PCDHA2Q9Y5H9 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
PCDHA2Q9Y5H9 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
PCDHA2Q9Y5H9 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC29.6■■■□□ 2.33
PCDHA2Q9Y5H9 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
PCDHA2Q9Y5H9 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
PCDHA2Q9Y5H9 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC29.6■■■□□ 2.33
PCDHA2Q9Y5H9 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC29.59■■■□□ 2.33
PCDHA2Q9Y5H9 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC29.59■■■□□ 2.33
PCDHA2Q9Y5H9 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC29.59■■■□□ 2.33
PCDHA2Q9Y5H9 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
PCDHA2Q9Y5H9 MIR6090-201ENST00000622481 60 ntBASIC29.58■■■□□ 2.33
PCDHA2Q9Y5H9 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC29.57■■■□□ 2.32
PCDHA2Q9Y5H9 CIB2-204ENST00000557846 934 ntTSL 3 BASIC29.56■■■□□ 2.32
PCDHA2Q9Y5H9 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC29.55■■■□□ 2.32
PCDHA2Q9Y5H9 ABCB10P1-201ENST00000614297 2181 ntBASIC29.55■■■□□ 2.32
PCDHA2Q9Y5H9 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
PCDHA2Q9Y5H9 AC021231.2-201ENST00000594613 730 ntBASIC29.55■■■□□ 2.32
PCDHA2Q9Y5H9 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
PCDHA2Q9Y5H9 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
PCDHA2Q9Y5H9 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
PCDHA2Q9Y5H9 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC29.53■■■□□ 2.32
PCDHA2Q9Y5H9 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC29.51■■■□□ 2.32
PCDHA2Q9Y5H9 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC29.51■■■□□ 2.31
PCDHA2Q9Y5H9 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC29.51■■■□□ 2.31
PCDHA2Q9Y5H9 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC29.51■■■□□ 2.31
PCDHA2Q9Y5H9 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC29.5■■■□□ 2.31
PCDHA2Q9Y5H9 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC29.5■■■□□ 2.31
PCDHA2Q9Y5H9 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
PCDHA2Q9Y5H9 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
PCDHA2Q9Y5H9 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC29.49■■■□□ 2.31
PCDHA2Q9Y5H9 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC29.49■■■□□ 2.31
PCDHA2Q9Y5H9 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
PCDHA2Q9Y5H9 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC29.48■■■□□ 2.31
PCDHA2Q9Y5H9 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
PCDHA2Q9Y5H9 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC29.47■■■□□ 2.31
PCDHA2Q9Y5H9 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC29.46■■■□□ 2.31
PCDHA2Q9Y5H9 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC29.46■■■□□ 2.31
PCDHA2Q9Y5H9 ST7-AS1-201ENST00000456775 1889 ntBASIC29.46■■■□□ 2.31
PCDHA2Q9Y5H9 AL135925.1-201ENST00000605920 1701 ntBASIC29.45■■■□□ 2.31
PCDHA2Q9Y5H9 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
PCDHA2Q9Y5H9 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC29.45■■■□□ 2.31
PCDHA2Q9Y5H9 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
PCDHA2Q9Y5H9 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
PCDHA2Q9Y5H9 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
PCDHA2Q9Y5H9 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC29.44■■■□□ 2.3
PCDHA2Q9Y5H9 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC29.43■■■□□ 2.3
PCDHA2Q9Y5H9 MBP-237ENST00000579129 1052 ntTSL 5 BASIC29.43■■■□□ 2.3
PCDHA2Q9Y5H9 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC29.42■■■□□ 2.3
PCDHA2Q9Y5H9 HLA-V-202ENST00000446817 847 ntBASIC29.42■■■□□ 2.3
PCDHA2Q9Y5H9 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC29.42■■■□□ 2.3
PCDHA2Q9Y5H9 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
PCDHA2Q9Y5H9 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC29.41■■■□□ 2.3
PCDHA2Q9Y5H9 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC29.41■■■□□ 2.3
PCDHA2Q9Y5H9 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC29.41■■■□□ 2.3
PCDHA2Q9Y5H9 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
PCDHA2Q9Y5H9 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
PCDHA2Q9Y5H9 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
PCDHA2Q9Y5H9 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC29.39■■■□□ 2.3
PCDHA2Q9Y5H9 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
PCDHA2Q9Y5H9 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
PCDHA2Q9Y5H9 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC29.37■■■□□ 2.29
PCDHA2Q9Y5H9 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC29.37■■■□□ 2.29
PCDHA2Q9Y5H9 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
PCDHA2Q9Y5H9 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC29.36■■■□□ 2.29
PCDHA2Q9Y5H9 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC29.36■■■□□ 2.29
PCDHA2Q9Y5H9 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC29.36■■■□□ 2.29
PCDHA2Q9Y5H9 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC29.35■■■□□ 2.29
PCDHA2Q9Y5H9 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
PCDHA2Q9Y5H9 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
PCDHA2Q9Y5H9 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
PCDHA2Q9Y5H9 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC29.32■■■□□ 2.28
PCDHA2Q9Y5H9 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
PCDHA2Q9Y5H9 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
PCDHA2Q9Y5H9 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC29.32■■■□□ 2.28
PCDHA2Q9Y5H9 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC29.32■■■□□ 2.28
PCDHA2Q9Y5H9 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC29.32■■■□□ 2.28
PCDHA2Q9Y5H9 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
PCDHA2Q9Y5H9 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
PCDHA2Q9Y5H9 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC29.3■■■□□ 2.28
PCDHA2Q9Y5H9 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
PCDHA2Q9Y5H9 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
PCDHA2Q9Y5H9 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
PCDHA2Q9Y5H9 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC29.29■■■□□ 2.28
PCDHA2Q9Y5H9 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC29.29■■■□□ 2.28
PCDHA2Q9Y5H9 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC29.28■■■□□ 2.28
PCDHA2Q9Y5H9 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms