Protein–RNA interactions for Protein: Q9HBX3

SND1-IT1, Uncharacterized protein encoded by SND1-IT1, humanhuman

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SND1-IT1Q9HBX3 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SND1-IT1Q9HBX3 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SND1-IT1Q9HBX3 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC17.44■□□□□ 0.38
SND1-IT1Q9HBX3 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC17.44■□□□□ 0.38
SND1-IT1Q9HBX3 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SND1-IT1Q9HBX3 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SND1-IT1Q9HBX3 ZNRF2P1-201ENST00000441407 443 ntBASIC17.43■□□□□ 0.38
SND1-IT1Q9HBX3 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC17.43■□□□□ 0.38
SND1-IT1Q9HBX3 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SND1-IT1Q9HBX3 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SND1-IT1Q9HBX3 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SND1-IT1Q9HBX3 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SND1-IT1Q9HBX3 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SND1-IT1Q9HBX3 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
SND1-IT1Q9HBX3 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
SND1-IT1Q9HBX3 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SND1-IT1Q9HBX3 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
SND1-IT1Q9HBX3 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SND1-IT1Q9HBX3 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
SND1-IT1Q9HBX3 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
SND1-IT1Q9HBX3 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SND1-IT1Q9HBX3 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC17.4■□□□□ 0.38
SND1-IT1Q9HBX3 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SND1-IT1Q9HBX3 EBPL-203ENST00000378270 579 ntTSL 2 BASIC17.4■□□□□ 0.38
SND1-IT1Q9HBX3 CREM-210ENST00000374721 2020 ntTSL 5 BASIC17.4■□□□□ 0.38
SND1-IT1Q9HBX3 AL135925.1-201ENST00000605920 1701 ntBASIC17.39■□□□□ 0.37
SND1-IT1Q9HBX3 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SND1-IT1Q9HBX3 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
SND1-IT1Q9HBX3 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SND1-IT1Q9HBX3 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SND1-IT1Q9HBX3 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
SND1-IT1Q9HBX3 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SND1-IT1Q9HBX3 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SND1-IT1Q9HBX3 DYNLL1-208ENST00000550178 581 ntBASIC17.38■□□□□ 0.37
SND1-IT1Q9HBX3 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC17.38■□□□□ 0.37
SND1-IT1Q9HBX3 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SND1-IT1Q9HBX3 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
SND1-IT1Q9HBX3 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SND1-IT1Q9HBX3 AL121749.1-202ENST00000609313 2153 ntBASIC17.36■□□□□ 0.37
SND1-IT1Q9HBX3 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
SND1-IT1Q9HBX3 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
SND1-IT1Q9HBX3 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
SND1-IT1Q9HBX3 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SND1-IT1Q9HBX3 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SND1-IT1Q9HBX3 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SND1-IT1Q9HBX3 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SND1-IT1Q9HBX3 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SND1-IT1Q9HBX3 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SND1-IT1Q9HBX3 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SND1-IT1Q9HBX3 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
SND1-IT1Q9HBX3 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SND1-IT1Q9HBX3 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SND1-IT1Q9HBX3 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SND1-IT1Q9HBX3 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
SND1-IT1Q9HBX3 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SND1-IT1Q9HBX3 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SND1-IT1Q9HBX3 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
SND1-IT1Q9HBX3 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SND1-IT1Q9HBX3 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SND1-IT1Q9HBX3 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SND1-IT1Q9HBX3 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SND1-IT1Q9HBX3 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SND1-IT1Q9HBX3 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SND1-IT1Q9HBX3 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC17.31■□□□□ 0.36
SND1-IT1Q9HBX3 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SND1-IT1Q9HBX3 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
SND1-IT1Q9HBX3 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SND1-IT1Q9HBX3 DRD5P2-201ENST00000421395 2012 ntBASIC17.3■□□□□ 0.36
SND1-IT1Q9HBX3 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC17.3■□□□□ 0.36
SND1-IT1Q9HBX3 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SND1-IT1Q9HBX3 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SND1-IT1Q9HBX3 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SND1-IT1Q9HBX3 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SND1-IT1Q9HBX3 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SND1-IT1Q9HBX3 AL139393.2-201ENST00000608721 2025 ntBASIC17.27■□□□□ 0.36
SND1-IT1Q9HBX3 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SND1-IT1Q9HBX3 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
SND1-IT1Q9HBX3 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SND1-IT1Q9HBX3 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
SND1-IT1Q9HBX3 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SND1-IT1Q9HBX3 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
SND1-IT1Q9HBX3 SHF-207ENST00000560540 2062 ntTSL 5 BASIC17.27■□□□□ 0.35
SND1-IT1Q9HBX3 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC17.27■□□□□ 0.35
SND1-IT1Q9HBX3 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SND1-IT1Q9HBX3 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
SND1-IT1Q9HBX3 AL031258.1-201ENST00000623562 325 ntBASIC17.26■□□□□ 0.35
SND1-IT1Q9HBX3 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SND1-IT1Q9HBX3 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
SND1-IT1Q9HBX3 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SND1-IT1Q9HBX3 AC135731.1-201ENST00000569415 2548 ntBASIC17.25■□□□□ 0.35
SND1-IT1Q9HBX3 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SND1-IT1Q9HBX3 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SND1-IT1Q9HBX3 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SND1-IT1Q9HBX3 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
SND1-IT1Q9HBX3 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC17.25■□□□□ 0.35
SND1-IT1Q9HBX3 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC17.25■□□□□ 0.35
SND1-IT1Q9HBX3 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
SND1-IT1Q9HBX3 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC17.25■□□□□ 0.35
SND1-IT1Q9HBX3 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SND1-IT1Q9HBX3 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms