RNA–Protein interactions for RNA: ENST00000357325.9

HDGF-201, Transcript of heparin binding growth factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDGF, Length 2,380 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGF-201ENST00000357325 NISCHQ9Y2I1 1504 aa52.6■■■■■ 6.01
HDGF-201ENST00000357325 SHROOM4Q9ULL8 1493 aa44.85■■■■■ 4.77
HDGF-201ENST00000357325 CCDC180Q9P1Z9 1646 aa44.72■■■■■ 4.75
HDGF-201ENST00000357325 ZCCHC6Q5VYS8 1495 aaKnown RBP44.44■■■■■ 4.7
HDGF-201ENST00000357325 SUPT5HO00267 1087 aaKnown RBP43.81■■■■■ 4.6
HDGF-201ENST00000357325 DCAF8L2P0C7V8 631 aa43.8■■■■■ 4.6
HDGF-201ENST00000357325 DCAF1Q9Y4B6 1507 aa43.04■■■■■ 4.48
HDGF-201ENST00000357325 CHIC1Q5VXU3 224 aa42.45■■■■■ 4.39
HDGF-201ENST00000357325 MYO15BQ96JP2 1530 aa42.32■■■■■ 4.37
HDGF-201ENST00000357325 SCRIBQ14160 1630 aa42.05■■■■■ 4.32
HDGF-201ENST00000357325 ABCC9O60706 1549 aa41.87■■■■■ 4.29
HDGF-201ENST00000357325 RSF1Q96T23 1441 aaPredicted RBP41.58■■■■■ 4.25
HDGF-201ENST00000357325 NACADO15069 1562 aa41.42■■■■■ 4.22
HDGF-201ENST00000357325 LOC105371045A0A1W2PR82 267 aa41.28■■■■■ 4.2
HDGF-201ENST00000357325 CECR2Q9BXF3 1484 aa41.18■■■■■ 4.18
HDGF-201ENST00000357325 RB1CC1Q8TDY2 1594 aa41.15■■■■■ 4.18
HDGF-201ENST00000357325 MROH2BQ7Z745 1585 aa40.96■■■■■ 4.15
HDGF-201ENST00000357325 PCGF6Q9BYE7 350 aa40.9■■■■■ 4.14
HDGF-201ENST00000357325 WIZO95785 1651 aa40.74■■■■■ 4.11
HDGF-201ENST00000357325 TRIM41Q8WV44 630 aa40.74■■■■■ 4.11
HDGF-201ENST00000357325 HRCP23327 699 aa40.65■■■■■ 4.1
HDGF-201ENST00000357325 FAM9AQ8IZU1 332 aaPredicted RBP40.53■■■■■ 4.08
HDGF-201ENST00000357325 BAZ1AQ9NRL2 1556 aaPredicted RBP40.36■■■■■ 4.05
HDGF-201ENST00000357325 UNC13AQ9UPW8 1703 aa40.34■■■■■ 4.05
HDGF-201ENST00000357325 EHMT2Q96KQ7 1210 aa40.28■■■■■ 4.04
HDGF-201ENST00000357325 SMARCA4P51532 1647 aa40.11■■■■■ 4.01
HDGF-201ENST00000357325 TRIM26Q12899 539 aaPredicted RBP40.06■■■■■ 4
HDGF-201ENST00000357325 PPARGC1BQ86YN6 1023 aaKnown RBP40.05■■■■■ 4
HDGF-201ENST00000357325 EIF4G1Q04637 1599 aaKnown RBP40.04■■■■■ 4
HDGF-201ENST00000357325 PABPN1Q86U42 306 aaKnown RBP eCLIP40.03■■■■■ 4
HDGF-201ENST00000357325 TOP2AP11388 1531 aaKnown RBP39.99■■■■□ 3.99
HDGF-201ENST00000357325 CCDC88BA6NC98 1476 aa39.89■■■■□ 3.98
HDGF-201ENST00000357325 BICRAQ9NZM4 1560 aa39.86■■■■□ 3.97
HDGF-201ENST00000357325 SMARCA2P51531 1590 aa39.82■■■■□ 3.97
HDGF-201ENST00000357325 ABCC8Q09428 1581 aa39.77■■■■□ 3.96
HDGF-201ENST00000357325 SOGA1O94964 1423 aa39.34■■■■□ 3.89
HDGF-201ENST00000357325 PEG3Q9GZU2 1588 aa39.3■■■■□ 3.88
HDGF-201ENST00000357325 RUSC2Q8N2Y8 1516 aa39.22■■■■□ 3.87
HDGF-201ENST00000357325 ATAD2BQ9ULI0 1458 aa39.16■■■■□ 3.86
HDGF-201ENST00000357325 WRNQ14191 1432 aaPredicted RBP eCLIP39.02■■■■□ 3.84
HDGF-201ENST00000357325 BAZ1BQ9UIG0 1483 aaKnown RBP39.01■■■■□ 3.84
HDGF-201ENST00000357325 CSRNP3Q8WYN3 585 aa39■■■■□ 3.83
HDGF-201ENST00000357325 CEP162Q5TB80 1403 aa38.96■■■■□ 3.83
HDGF-201ENST00000357325 SYNJ1O43426 1573 aa38.91■■■■□ 3.82
HDGF-201ENST00000357325 ZEB1P37275 1124 aaPredicted RBP38.91■■■■□ 3.82
HDGF-201ENST00000357325 TTBK1Q5TCY1 1321 aaPredicted RBP38.89■■■■□ 3.82
HDGF-201ENST00000357325 TNIKQ9UKE5 1360 aa38.87■■■■□ 3.81
HDGF-201ENST00000357325 EEA1Q15075 1411 aa38.86■■■■□ 3.81
HDGF-201ENST00000357325 UBTFP17480 764 aaKnown RBP38.85■■■■□ 3.81
HDGF-201ENST00000357325 GOLGA3Q08378 1498 aa38.68■■■■□ 3.78
HDGF-201ENST00000357325 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP38.67■■■■□ 3.78
HDGF-201ENST00000357325 CEP164Q9UPV0 1460 aa38.47■■■■□ 3.75
HDGF-201ENST00000357325 KIF21BO75037 1637 aa38.43■■■■□ 3.74
HDGF-201ENST00000357325 CCER1Q8TC90 406 aaPredicted RBP38.43■■■■□ 3.74
HDGF-201ENST00000357325 NCAPD3P42695 1498 aa38.39■■■■□ 3.74
HDGF-201ENST00000357325 TOP2BQ02880 1626 aa38.37■■■■□ 3.73
HDGF-201ENST00000357325 RAPGEF2Q9Y4G8 1499 aa38.37■■■■□ 3.73
HDGF-201ENST00000357325 HMGXB3Q12766 1538 aa38.32■■■■□ 3.73
HDGF-201ENST00000357325 RANGAP1P46060 587 aaPredicted RBP38.29■■■■□ 3.72
HDGF-201ENST00000357325 CLIP1P30622 1438 aa38.27■■■■□ 3.72
HDGF-201ENST00000357325 BIVM-ERCC5R4GMW8 1640 aa38.22■■■■□ 3.71
HDGF-201ENST00000357325 CUX1P39880 1505 aa38.13■■■■□ 3.69
HDGF-201ENST00000357325 VPS8Q8N3P4 1428 aa38.06■■■■□ 3.68
HDGF-201ENST00000357325 CFTRP13569 1480 aa38.04■■■■□ 3.68
HDGF-201ENST00000357325 PRXQ9BXM0 1461 aa37.95■■■■□ 3.67
HDGF-201ENST00000357325 HNRNPUL2Q1KMD3 747 aaKnown RBP37.91■■■■□ 3.66
HDGF-201ENST00000357325 ERICH3Q5RHP9 1530 aa37.84■■■■□ 3.65
HDGF-201ENST00000357325 APLP2Q06481 763 aa37.8■■■■□ 3.64
HDGF-201ENST00000357325 KIF27Q86VH2 1401 aa37.79■■■■□ 3.64
HDGF-201ENST00000357325 ARAP1Q96P48 1450 aa37.74■■■■□ 3.63
HDGF-201ENST00000357325 CADPSQ9ULU8 1353 aa37.66■■■■□ 3.62
HDGF-201ENST00000357325 PRDM2Q13029 1718 aa37.64■■■■□ 3.62
HDGF-201ENST00000357325 CC2D2AQ9P2K1 1620 aa37.62■■■■□ 3.61
HDGF-201ENST00000357325 KANK4Q5T7N3 995 aaPredicted RBP37.59■■■■□ 3.61
HDGF-201ENST00000357325 CUX2O14529 1486 aa37.56■■■■□ 3.6
HDGF-201ENST00000357325 DIEXFQ68CQ4 756 aaKnown RBP37.53■■■■□ 3.6
HDGF-201ENST00000357325 IGF1RP08069 1367 aa37.49■■■■□ 3.59
HDGF-201ENST00000357325 FGD5Q6ZNL6 1462 aa37.47■■■■□ 3.59
HDGF-201ENST00000357325 ARHGAP35Q9NRY4 1499 aa37.46■■■■□ 3.59
HDGF-201ENST00000357325 SCAF1Q9H7N4 1312 aaKnown RBP37.36■■■■□ 3.57
HDGF-201ENST00000357325 FANCD2Q9BXW9 1451 aa37.32■■■■□ 3.56
HDGF-201ENST00000357325 ZNF316A6NFI3 1004 aaPredicted RBP37.3■■■■□ 3.56
HDGF-201ENST00000357325 CARMIL1Q5VZK9 1371 aa37.3■■■■□ 3.56
HDGF-201ENST00000357325 NESP48681 1621 aa37.26■■■■□ 3.56
HDGF-201ENST00000357325 RAD54L2Q9Y4B4 1467 aa37.19■■■■□ 3.54
HDGF-201ENST00000357325 RRBP1Q9P2E9 1410 aaKnown RBP37.13■■■■□ 3.53
HDGF-201ENST00000357325 NEUROD1Q13562 356 aa37.1■■■■□ 3.53
HDGF-201ENST00000357325 DHX57Q6P158 1386 aaKnown RBP37.08■■■■□ 3.53
HDGF-201ENST00000357325 TOPBP1Q92547 1522 aa37.06■■■■□ 3.52
HDGF-201ENST00000357325 P3H3Q8IVL6 736 aa37.06■■■■□ 3.52
HDGF-201ENST00000357325 DNMBPQ6XZF7 1577 aa37.06■■■■□ 3.52
HDGF-201ENST00000357325 POLA1P09884 1462 aaPredicted RBP37.05■■■■□ 3.52
HDGF-201ENST00000357325 ITGAEP38570 1179 aa37.03■■■■□ 3.52
HDGF-201ENST00000357325 ACIN1Q9UKV3 1341 aaKnown RBP37.02■■■■□ 3.52
HDGF-201ENST00000357325 CCNB3Q8WWL7 1395 aa37.01■■■■□ 3.51
HDGF-201ENST00000357325 DNAJC5BQ9UF47 199 aa37■■■■□ 3.51
HDGF-201ENST00000357325 ABCA10Q8WWZ4 1543 aa36.96■■■■□ 3.51
HDGF-201ENST00000357325 TIAM1Q13009 1591 aa36.95■■■■□ 3.51
HDGF-201ENST00000357325 URB2Q14146 1524 aaKnown RBP36.85■■■■□ 3.49
HDGF-201ENST00000357325 MIER1Q8N108 512 aa36.84■■■■□ 3.49
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms