Protein–RNA interactions for Protein: P78556

CCL20, C-C motif chemokine 20, humanhuman

Predictions only

Length 96 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCL20P78556 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CCL20P78556 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC20.84■□□□□ 0.93
CCL20P78556 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
CCL20P78556 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCL20P78556 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCL20P78556 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCL20P78556 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCL20P78556 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
CCL20P78556 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC20.82■□□□□ 0.92
CCL20P78556 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC20.82■□□□□ 0.92
CCL20P78556 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCL20P78556 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
CCL20P78556 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCL20P78556 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
CCL20P78556 AL139393.2-201ENST00000608721 2025 ntBASIC20.8■□□□□ 0.92
CCL20P78556 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCL20P78556 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC20.79■□□□□ 0.92
CCL20P78556 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC20.78■□□□□ 0.92
CCL20P78556 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
CCL20P78556 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
CCL20P78556 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCL20P78556 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCL20P78556 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCL20P78556 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCL20P78556 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCL20P78556 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC20.77■□□□□ 0.92
CCL20P78556 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
CCL20P78556 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCL20P78556 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCL20P78556 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCL20P78556 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCL20P78556 PKM-204ENST00000449901 2526 ntTSL 2 BASIC20.74■□□□□ 0.91
CCL20P78556 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCL20P78556 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
CCL20P78556 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCL20P78556 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCL20P78556 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
CCL20P78556 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCL20P78556 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCL20P78556 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
CCL20P78556 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCL20P78556 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCL20P78556 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCL20P78556 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCL20P78556 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC20.7■□□□□ 0.9
CCL20P78556 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCL20P78556 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCL20P78556 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCL20P78556 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCL20P78556 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCL20P78556 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCL20P78556 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
CCL20P78556 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC20.66■□□□□ 0.9
CCL20P78556 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCL20P78556 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCL20P78556 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCL20P78556 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
CCL20P78556 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCL20P78556 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CCL20P78556 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
CCL20P78556 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
CCL20P78556 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCL20P78556 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
CCL20P78556 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCL20P78556 AL449106.1-201ENST00000608517 1980 ntBASIC20.63■□□□□ 0.89
CCL20P78556 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCL20P78556 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC20.63■□□□□ 0.89
CCL20P78556 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
CCL20P78556 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC20.63■□□□□ 0.89
CCL20P78556 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCL20P78556 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC20.62■□□□□ 0.89
CCL20P78556 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCL20P78556 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCL20P78556 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
CCL20P78556 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCL20P78556 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC20.59■□□□□ 0.89
CCL20P78556 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCL20P78556 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCL20P78556 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC20.59■□□□□ 0.89
CCL20P78556 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCL20P78556 MVK-208ENST00000539696 608 ntTSL 5 BASIC20.58■□□□□ 0.89
CCL20P78556 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC20.58■□□□□ 0.88
CCL20P78556 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
CCL20P78556 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCL20P78556 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCL20P78556 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCL20P78556 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCL20P78556 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC20.57■□□□□ 0.88
CCL20P78556 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
CCL20P78556 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC20.56■□□□□ 0.88
CCL20P78556 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCL20P78556 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCL20P78556 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCL20P78556 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCL20P78556 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCL20P78556 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC20.55■□□□□ 0.88
CCL20P78556 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
CCL20P78556 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCL20P78556 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCL20P78556 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms