RNA–Protein interactions for RNA: ENST00000543264.6

SHD-201, Transcript of Src homology 2 domain containing transforming protein D, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHD, Length 2,577 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHD-201ENST00000543264 NISCHQ9Y2I1 1504 aa46.39■■■■■ 5.02
SHD-201ENST00000543264 SHROOM4Q9ULL8 1493 aa40.64■■■■■ 4.1
SHD-201ENST00000543264 SUPT5HO00267 1087 aaKnown RBP40.3■■■■■ 4.04
SHD-201ENST00000543264 HRCP23327 699 aa39.76■■■■□ 3.95
SHD-201ENST00000543264 MYO15BQ96JP2 1530 aa39.49■■■■□ 3.91
SHD-201ENST00000543264 CHIC1Q5VXU3 224 aa39.44■■■■□ 3.9
SHD-201ENST00000543264 ZCCHC6Q5VYS8 1495 aaKnown RBP39.36■■■■□ 3.89
SHD-201ENST00000543264 PCGF6Q9BYE7 350 aa39.28■■■■□ 3.88
SHD-201ENST00000543264 PPARGC1BQ86YN6 1023 aaKnown RBP38.98■■■■□ 3.83
SHD-201ENST00000543264 CCDC180Q9P1Z9 1646 aa38.8■■■■□ 3.8
SHD-201ENST00000543264 DCAF8L2P0C7V8 631 aa38.77■■■■□ 3.8
SHD-201ENST00000543264 DCAF1Q9Y4B6 1507 aa38.51■■■■□ 3.76
SHD-201ENST00000543264 LOC105371045A0A1W2PR82 267 aa38.49■■■■□ 3.75
SHD-201ENST00000543264 TRIM26Q12899 539 aaPredicted RBP38.17■■■■□ 3.7
SHD-201ENST00000543264 ZEB1P37275 1124 aaPredicted RBP37.66■■■■□ 3.62
SHD-201ENST00000543264 PELP1Q8IZL8 1130 aaKnown RBP37.43■■■■□ 3.58
SHD-201ENST00000543264 TRIM41Q8WV44 630 aa37.35■■■■□ 3.57
SHD-201ENST00000543264 ABCC9O60706 1549 aa37.29■■■■□ 3.56
SHD-201ENST00000543264 FAM9AQ8IZU1 332 aaPredicted RBP37.27■■■■□ 3.56
SHD-201ENST00000543264 SCAF1Q9H7N4 1312 aaKnown RBP37.27■■■■□ 3.56
SHD-201ENST00000543264 RSF1Q96T23 1441 aaPredicted RBP37.15■■■■□ 3.54
SHD-201ENST00000543264 EHMT2Q96KQ7 1210 aa37.09■■■■□ 3.53
SHD-201ENST00000543264 RB1CC1Q8TDY2 1594 aa36.89■■■■□ 3.5
SHD-201ENST00000543264 SCRIBQ14160 1630 aa36.86■■■■□ 3.49
SHD-201ENST00000543264 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP36.62■■■■□ 3.45
SHD-201ENST00000543264 ACIN1Q9UKV3 1341 aaKnown RBP36.57■■■■□ 3.44
SHD-201ENST00000543264 CCER1Q8TC90 406 aaPredicted RBP36.55■■■■□ 3.44
SHD-201ENST00000543264 NEUROD1Q13562 356 aa36.5■■■■□ 3.43
SHD-201ENST00000543264 CECR2Q9BXF3 1484 aa36.3■■■■□ 3.4
SHD-201ENST00000543264 DIEXFQ68CQ4 756 aaKnown RBP36.29■■■■□ 3.4
SHD-201ENST00000543264 GTF3C3Q9Y5Q9 886 aa36.25■■■■□ 3.39
SHD-201ENST00000543264 MROH2BQ7Z745 1585 aa36.21■■■■□ 3.39
SHD-201ENST00000543264 CENPBP07199 599 aaPredicted RBP36.21■■■■□ 3.39
SHD-201ENST00000543264 TTBK1Q5TCY1 1321 aaPredicted RBP36.1■■■■□ 3.37
SHD-201ENST00000543264 WIZO95785 1651 aa36.07■■■■□ 3.37
SHD-201ENST00000543264 WRNQ14191 1432 aaPredicted RBP eCLIP35.81■■■■□ 3.32
SHD-201ENST00000543264 NACADO15069 1562 aa35.77■■■■□ 3.32
SHD-201ENST00000543264 EIF4G1Q04637 1599 aaKnown RBP35.77■■■■□ 3.32
SHD-201ENST00000543264 MYT1Q01538 1121 aa35.76■■■■□ 3.32
SHD-201ENST00000543264 BAZ1AQ9NRL2 1556 aaPredicted RBP35.76■■■■□ 3.32
SHD-201ENST00000543264 ZNF316A6NFI3 1004 aaPredicted RBP35.74■■■■□ 3.31
SHD-201ENST00000543264 CEP162Q5TB80 1403 aa35.73■■■■□ 3.31
SHD-201ENST00000543264 CCDC88BA6NC98 1476 aa35.67■■■■□ 3.3
SHD-201ENST00000543264 ABCC8Q09428 1581 aa35.66■■■■□ 3.3
SHD-201ENST00000543264 YTHDC1Q96MU7 727 aaKnown RBP35.65■■■■□ 3.3
SHD-201ENST00000543264 TNIKQ9UKE5 1360 aa35.56■■■■□ 3.28
SHD-201ENST00000543264 SOGA1O94964 1423 aa35.54■■■■□ 3.28
SHD-201ENST00000543264 UBTFP17480 764 aaKnown RBP35.52■■■■□ 3.28
SHD-201ENST00000543264 CSRNP3Q8WYN3 585 aa35.43■■■■□ 3.26
SHD-201ENST00000543264 MIER1Q8N108 512 aa35.42■■■■□ 3.26
SHD-201ENST00000543264 TOP2AP11388 1531 aaKnown RBP35.37■■■■□ 3.25
SHD-201ENST00000543264 RUSC2Q8N2Y8 1516 aa35.33■■■■□ 3.25
SHD-201ENST00000543264 HNRNPUL2Q1KMD3 747 aaKnown RBP35.31■■■■□ 3.24
SHD-201ENST00000543264 EEA1Q15075 1411 aa35.26■■■■□ 3.24
SHD-201ENST00000543264 SMARCA2P51531 1590 aa35.26■■■■□ 3.23
SHD-201ENST00000543264 GOLGA3Q08378 1498 aa35.17■■■■□ 3.22
SHD-201ENST00000543264 SMARCA4P51532 1647 aa35.13■■■■□ 3.21
SHD-201ENST00000543264 CLIP1P30622 1438 aa34.89■■■■□ 3.18
SHD-201ENST00000543264 APLP2Q06481 763 aa34.88■■■■□ 3.17
SHD-201ENST00000543264 CEP164Q9UPV0 1460 aa34.86■■■■□ 3.17
SHD-201ENST00000543264 VPS8Q8N3P4 1428 aa34.79■■■■□ 3.16
SHD-201ENST00000543264 RANGAP1P46060 587 aaPredicted RBP34.77■■■■□ 3.16
SHD-201ENST00000543264 KIF21BO75037 1637 aa34.73■■■■□ 3.15
SHD-201ENST00000543264 SYNJ1O43426 1573 aa34.64■■■■□ 3.14
SHD-201ENST00000543264 SUPT16HQ9Y5B9 1047 aaKnown RBP34.64■■■■□ 3.14
SHD-201ENST00000543264 UNC13AQ9UPW8 1703 aa34.59■■■■□ 3.13
SHD-201ENST00000543264 RAPGEF2Q9Y4G8 1499 aa34.58■■■■□ 3.13
SHD-201ENST00000543264 CLSPNQ9HAW4 1339 aa34.57■■■■□ 3.12
SHD-201ENST00000543264 BAZ1BQ9UIG0 1483 aaKnown RBP34.54■■■■□ 3.12
SHD-201ENST00000543264 DHX57Q6P158 1386 aaKnown RBP34.53■■■■□ 3.12
SHD-201ENST00000543264 PABPN1Q86U42 306 aaKnown RBP eCLIP34.44■■■■□ 3.1
SHD-201ENST00000543264 TSHZ2Q9NRE2 1034 aa34.32■■■■□ 3.08
SHD-201ENST00000543264 KANK4Q5T7N3 995 aaPredicted RBP34.3■■■■□ 3.08
SHD-201ENST00000543264 PEG3Q9GZU2 1588 aa34.26■■■■□ 3.08
SHD-201ENST00000543264 ARAP1Q96P48 1450 aa34.16■■■■□ 3.06
SHD-201ENST00000543264 KCNH8Q96L42 1107 aa34.15■■■■□ 3.06
SHD-201ENST00000543264 BICRAQ9NZM4 1560 aa34.12■■■■□ 3.05
SHD-201ENST00000543264 ANP32EQ9BTT0 268 aa34.1■■■■□ 3.05
SHD-201ENST00000543264 ITGAEP38570 1179 aa34.09■■■■□ 3.05
SHD-201ENST00000543264 RRBP1Q9P2E9 1410 aaKnown RBP34.08■■■■□ 3.05
SHD-201ENST00000543264 ATAD2BQ9ULI0 1458 aa34.07■■■■□ 3.04
SHD-201ENST00000543264 TOP2BQ02880 1626 aa34.06■■■■□ 3.04
SHD-201ENST00000543264 BCANQ96GW7 911 aa34.02■■■■□ 3.04
SHD-201ENST00000543264 PRXQ9BXM0 1461 aa34.01■■■■□ 3.04
SHD-201ENST00000543264 ERICH3Q5RHP9 1530 aa34.01■■■■□ 3.03
SHD-201ENST00000543264 CCNB3Q8WWL7 1395 aa33.99■■■■□ 3.03
SHD-201ENST00000543264 CUX2O14529 1486 aa33.96■■■■□ 3.03
SHD-201ENST00000543264 FKBP8Q14318 412 aa33.89■■■■□ 3.02
SHD-201ENST00000543264 BIVM-ERCC5R4GMW8 1640 aa33.85■■■■□ 3.01
SHD-201ENST00000543264 RAB3GAP2Q9H2M9 1393 aa33.85■■■■□ 3.01
SHD-201ENST00000543264 DDX10Q13206 875 aaKnown RBP33.84■■■■□ 3.01
SHD-201ENST00000543264 MAPKBP1O60336 1514 aa33.76■■■□□ 2.99
SHD-201ENST00000543264 ARHGAP35Q9NRY4 1499 aa33.73■■■□□ 2.99
SHD-201ENST00000543264 KIF27Q86VH2 1401 aa33.71■■■□□ 2.99
SHD-201ENST00000543264 SIN3AQ96ST3 1273 aa33.7■■■□□ 2.99
SHD-201ENST00000543264 NEFLP07196 543 aa33.65■■■□□ 2.98
SHD-201ENST00000543264 WDR97A6NE52 1622 aa33.64■■■□□ 2.98
SHD-201ENST00000543264 SETD5Q9C0A6 1442 aa33.63■■■□□ 2.97
SHD-201ENST00000543264 CUX1P39880 1505 aa33.61■■■□□ 2.97
SHD-201ENST00000543264 PPP1R15AO75807 674 aaPredicted RBP33.6■■■□□ 2.97
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms