RNA–Protein interactions for RNA: ENST00000357798.9

NPAS3-203, Transcript of neuronal PAS domain protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NPAS3, Length 2,763 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3-203ENST00000357798 NISCHQ9Y2I1 1504 aa47.24■■■■■ 5.15
NPAS3-203ENST00000357798 SHROOM4Q9ULL8 1493 aa40.59■■■■■ 4.09
NPAS3-203ENST00000357798 SUPT5HO00267 1087 aaKnown RBP40.15■■■■■ 4.02
NPAS3-203ENST00000357798 ZCCHC6Q5VYS8 1495 aaKnown RBP40.14■■■■■ 4.02
NPAS3-203ENST00000357798 CCDC180Q9P1Z9 1646 aa39.95■■■■□ 3.99
NPAS3-203ENST00000357798 HRCP23327 699 aa39.66■■■■□ 3.94
NPAS3-203ENST00000357798 MYO15BQ96JP2 1530 aa39.61■■■■□ 3.93
NPAS3-203ENST00000357798 CHIC1Q5VXU3 224 aa39.52■■■■□ 3.92
NPAS3-203ENST00000357798 PCGF6Q9BYE7 350 aa38.98■■■■□ 3.83
NPAS3-203ENST00000357798 DCAF1Q9Y4B6 1507 aa38.91■■■■□ 3.82
NPAS3-203ENST00000357798 DCAF8L2P0C7V8 631 aa38.63■■■■□ 3.77
NPAS3-203ENST00000357798 PPARGC1BQ86YN6 1023 aaKnown RBP38.53■■■■□ 3.76
NPAS3-203ENST00000357798 LOC105371045A0A1W2PR82 267 aa38.27■■■■□ 3.72
NPAS3-203ENST00000357798 TRIM26Q12899 539 aaPredicted RBP38.19■■■■□ 3.7
NPAS3-203ENST00000357798 ABCC9O60706 1549 aa38.07■■■■□ 3.68
NPAS3-203ENST00000357798 ZEB1P37275 1124 aaPredicted RBP37.79■■■■□ 3.64
NPAS3-203ENST00000357798 RSF1Q96T23 1441 aaPredicted RBP37.63■■■■□ 3.61
NPAS3-203ENST00000357798 RB1CC1Q8TDY2 1594 aa37.43■■■■□ 3.58
NPAS3-203ENST00000357798 TRIM41Q8WV44 630 aa37.41■■■■□ 3.58
NPAS3-203ENST00000357798 SCRIBQ14160 1630 aa37.41■■■■□ 3.58
NPAS3-203ENST00000357798 PELP1Q8IZL8 1130 aaKnown RBP37.32■■■■□ 3.57
NPAS3-203ENST00000357798 FAM9AQ8IZU1 332 aaPredicted RBP37.03■■■■□ 3.52
NPAS3-203ENST00000357798 SCAF1Q9H7N4 1312 aaKnown RBP36.95■■■■□ 3.51
NPAS3-203ENST00000357798 MROH2BQ7Z745 1585 aa36.72■■■■□ 3.47
NPAS3-203ENST00000357798 CECR2Q9BXF3 1484 aa36.71■■■■□ 3.47
NPAS3-203ENST00000357798 NACADO15069 1562 aa36.69■■■■□ 3.46
NPAS3-203ENST00000357798 WIZO95785 1651 aa36.59■■■■□ 3.45
NPAS3-203ENST00000357798 EHMT2Q96KQ7 1210 aa36.59■■■■□ 3.45
NPAS3-203ENST00000357798 EIF4G1Q04637 1599 aaKnown RBP36.55■■■■□ 3.44
NPAS3-203ENST00000357798 BAZ1AQ9NRL2 1556 aaPredicted RBP36.52■■■■□ 3.44
NPAS3-203ENST00000357798 ACIN1Q9UKV3 1341 aaKnown RBP36.4■■■■□ 3.42
NPAS3-203ENST00000357798 CCER1Q8TC90 406 aaPredicted RBP36.39■■■■□ 3.42
NPAS3-203ENST00000357798 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP36.38■■■■□ 3.41
NPAS3-203ENST00000357798 WRNQ14191 1432 aaPredicted RBP eCLIP36.31■■■■□ 3.4
NPAS3-203ENST00000357798 NEUROD1Q13562 356 aa36.21■■■■□ 3.39
NPAS3-203ENST00000357798 DIEXFQ68CQ4 756 aaKnown RBP36.14■■■■□ 3.38
NPAS3-203ENST00000357798 CENPBP07199 599 aaPredicted RBP36.11■■■■□ 3.37
NPAS3-203ENST00000357798 TOP2AP11388 1531 aaKnown RBP36.09■■■■□ 3.37
NPAS3-203ENST00000357798 CEP162Q5TB80 1403 aa36.03■■■■□ 3.36
NPAS3-203ENST00000357798 ABCC8Q09428 1581 aa35.99■■■■□ 3.35
NPAS3-203ENST00000357798 CCDC88BA6NC98 1476 aa35.99■■■■□ 3.35
NPAS3-203ENST00000357798 TNIKQ9UKE5 1360 aa35.96■■■■□ 3.35
NPAS3-203ENST00000357798 GTF3C3Q9Y5Q9 886 aa35.93■■■■□ 3.34
NPAS3-203ENST00000357798 EEA1Q15075 1411 aa35.9■■■■□ 3.34
NPAS3-203ENST00000357798 SMARCA2P51531 1590 aa35.89■■■■□ 3.34
NPAS3-203ENST00000357798 SMARCA4P51532 1647 aa35.86■■■■□ 3.33
NPAS3-203ENST00000357798 SOGA1O94964 1423 aa35.77■■■■□ 3.32
NPAS3-203ENST00000357798 MYT1Q01538 1121 aa35.72■■■■□ 3.31
NPAS3-203ENST00000357798 ZNF316A6NFI3 1004 aaPredicted RBP35.71■■■■□ 3.31
NPAS3-203ENST00000357798 TTBK1Q5TCY1 1321 aaPredicted RBP35.66■■■■□ 3.3
NPAS3-203ENST00000357798 CSRNP3Q8WYN3 585 aa35.65■■■■□ 3.3
NPAS3-203ENST00000357798 GOLGA3Q08378 1498 aa35.64■■■■□ 3.3
NPAS3-203ENST00000357798 RUSC2Q8N2Y8 1516 aa35.55■■■■□ 3.28
NPAS3-203ENST00000357798 UBTFP17480 764 aaKnown RBP35.5■■■■□ 3.27
NPAS3-203ENST00000357798 UNC13AQ9UPW8 1703 aa35.45■■■■□ 3.27
NPAS3-203ENST00000357798 KIF21BO75037 1637 aa35.39■■■■□ 3.26
NPAS3-203ENST00000357798 CEP164Q9UPV0 1460 aa35.36■■■■□ 3.25
NPAS3-203ENST00000357798 MIER1Q8N108 512 aa35.23■■■■□ 3.23
NPAS3-203ENST00000357798 YTHDC1Q96MU7 727 aaKnown RBP35.21■■■■□ 3.23
NPAS3-203ENST00000357798 CLIP1P30622 1438 aa35.2■■■■□ 3.23
NPAS3-203ENST00000357798 VPS8Q8N3P4 1428 aa35.19■■■■□ 3.22
NPAS3-203ENST00000357798 PEG3Q9GZU2 1588 aa35.18■■■■□ 3.22
NPAS3-203ENST00000357798 BAZ1BQ9UIG0 1483 aaKnown RBP35.17■■■■□ 3.22
NPAS3-203ENST00000357798 SYNJ1O43426 1573 aa35.16■■■■□ 3.22
NPAS3-203ENST00000357798 HNRNPUL2Q1KMD3 747 aaKnown RBP35.14■■■■□ 3.22
NPAS3-203ENST00000357798 APLP2Q06481 763 aa34.94■■■■□ 3.18
NPAS3-203ENST00000357798 CLSPNQ9HAW4 1339 aa34.93■■■■□ 3.18
NPAS3-203ENST00000357798 BICRAQ9NZM4 1560 aa34.9■■■■□ 3.18
NPAS3-203ENST00000357798 RAPGEF2Q9Y4G8 1499 aa34.9■■■■□ 3.18
NPAS3-203ENST00000357798 DHX57Q6P158 1386 aaKnown RBP34.73■■■■□ 3.15
NPAS3-203ENST00000357798 TOP2BQ02880 1626 aa34.72■■■■□ 3.15
NPAS3-203ENST00000357798 ATAD2BQ9ULI0 1458 aa34.69■■■■□ 3.14
NPAS3-203ENST00000357798 ERICH3Q5RHP9 1530 aa34.69■■■■□ 3.14
NPAS3-203ENST00000357798 BIVM-ERCC5R4GMW8 1640 aa34.63■■■■□ 3.13
NPAS3-203ENST00000357798 PABPN1Q86U42 306 aaKnown RBP eCLIP34.6■■■■□ 3.13
NPAS3-203ENST00000357798 ARAP1Q96P48 1450 aa34.58■■■■□ 3.13
NPAS3-203ENST00000357798 PRXQ9BXM0 1461 aa34.55■■■■□ 3.12
NPAS3-203ENST00000357798 RRBP1Q9P2E9 1410 aaKnown RBP34.51■■■■□ 3.12
NPAS3-203ENST00000357798 CUX2O14529 1486 aa34.5■■■■□ 3.11
NPAS3-203ENST00000357798 SUPT16HQ9Y5B9 1047 aaKnown RBP34.48■■■■□ 3.11
NPAS3-203ENST00000357798 RANGAP1P46060 587 aaPredicted RBP34.45■■■■□ 3.11
NPAS3-203ENST00000357798 KANK4Q5T7N3 995 aaPredicted RBP34.36■■■■□ 3.09
NPAS3-203ENST00000357798 CCNB3Q8WWL7 1395 aa34.25■■■■□ 3.07
NPAS3-203ENST00000357798 KIF27Q86VH2 1401 aa34.18■■■■□ 3.06
NPAS3-203ENST00000357798 CUX1P39880 1505 aa34.16■■■■□ 3.06
NPAS3-203ENST00000357798 ARHGAP35Q9NRY4 1499 aa34.14■■■■□ 3.06
NPAS3-203ENST00000357798 TSHZ2Q9NRE2 1034 aa34.12■■■■□ 3.05
NPAS3-203ENST00000357798 MAPKBP1O60336 1514 aa34.08■■■■□ 3.05
NPAS3-203ENST00000357798 MAP3K1Q13233 1512 aa34.04■■■■□ 3.04
NPAS3-203ENST00000357798 HMGXB3Q12766 1538 aa34.03■■■■□ 3.04
NPAS3-203ENST00000357798 RAB3GAP2Q9H2M9 1393 aa34.02■■■■□ 3.04
NPAS3-203ENST00000357798 TIAM1Q13009 1591 aa33.97■■■■□ 3.03
NPAS3-203ENST00000357798 SETD5Q9C0A6 1442 aa33.9■■■■□ 3.02
NPAS3-203ENST00000357798 NCAPD3P42695 1498 aa33.9■■■■□ 3.02
NPAS3-203ENST00000357798 ANP32EQ9BTT0 268 aa33.89■■■■□ 3.01
NPAS3-203ENST00000357798 ITGAEP38570 1179 aa33.87■■■■□ 3.01
NPAS3-203ENST00000357798 KCNH8Q96L42 1107 aa33.86■■■■□ 3.01
NPAS3-203ENST00000357798 CFTRP13569 1480 aa33.84■■■■□ 3.01
NPAS3-203ENST00000357798 WDR97A6NE52 1622 aa33.82■■■■□ 3
NPAS3-203ENST00000357798 LRRC9Q6ZRR7 1453 aa33.79■■■■□ 3
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms