Protein–RNA interactions for Protein: Q9Y5F3

PCDHB1, Protocadherin beta-1, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB1Q9Y5F3 AC087741.3-201ENST00000624270 1347 ntBASIC26.7■■□□□ 1.87
PCDHB1Q9Y5F3 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
PCDHB1Q9Y5F3 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC26.7■■□□□ 1.86
PCDHB1Q9Y5F3 DUX4L28-201ENST00000623687 678 ntBASIC26.7■■□□□ 1.86
PCDHB1Q9Y5F3 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC26.7■■□□□ 1.86
PCDHB1Q9Y5F3 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC26.69■■□□□ 1.86
PCDHB1Q9Y5F3 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
PCDHB1Q9Y5F3 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
PCDHB1Q9Y5F3 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
PCDHB1Q9Y5F3 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC26.67■■□□□ 1.86
PCDHB1Q9Y5F3 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
PCDHB1Q9Y5F3 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
PCDHB1Q9Y5F3 PVT1-219ENST00000523427 938 ntTSL 3 BASIC26.66■■□□□ 1.86
PCDHB1Q9Y5F3 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC26.66■■□□□ 1.86
PCDHB1Q9Y5F3 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC26.66■■□□□ 1.86
PCDHB1Q9Y5F3 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC26.65■■□□□ 1.86
PCDHB1Q9Y5F3 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
PCDHB1Q9Y5F3 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
PCDHB1Q9Y5F3 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
PCDHB1Q9Y5F3 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
PCDHB1Q9Y5F3 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC26.63■■□□□ 1.85
PCDHB1Q9Y5F3 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC26.62■■□□□ 1.85
PCDHB1Q9Y5F3 MIR762-201ENST00000390236 83 ntBASIC26.62■■□□□ 1.85
PCDHB1Q9Y5F3 MLEC-202ENST00000412616 841 ntTSL 3 BASIC26.62■■□□□ 1.85
PCDHB1Q9Y5F3 CHML-205ENST00000638160 705 ntTSL 3 BASIC26.62■■□□□ 1.85
PCDHB1Q9Y5F3 AL161658.1-201ENST00000623641 1967 ntBASIC26.62■■□□□ 1.85
PCDHB1Q9Y5F3 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
PCDHB1Q9Y5F3 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC26.61■■□□□ 1.85
PCDHB1Q9Y5F3 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
PCDHB1Q9Y5F3 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
PCDHB1Q9Y5F3 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC26.58■■□□□ 1.85
PCDHB1Q9Y5F3 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
PCDHB1Q9Y5F3 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
PCDHB1Q9Y5F3 AC044849.2-201ENST00000606596 710 ntBASIC26.57■■□□□ 1.84
PCDHB1Q9Y5F3 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC26.56■■□□□ 1.84
PCDHB1Q9Y5F3 AC005559.1-201ENST00000589661 871 ntBASIC26.56■■□□□ 1.84
PCDHB1Q9Y5F3 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
PCDHB1Q9Y5F3 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
PCDHB1Q9Y5F3 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC26.55■■□□□ 1.84
PCDHB1Q9Y5F3 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC26.54■■□□□ 1.84
PCDHB1Q9Y5F3 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
PCDHB1Q9Y5F3 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC26.51■■□□□ 1.84
PCDHB1Q9Y5F3 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC26.51■■□□□ 1.83
PCDHB1Q9Y5F3 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC26.5■■□□□ 1.83
PCDHB1Q9Y5F3 MBP-237ENST00000579129 1052 ntTSL 5 BASIC26.5■■□□□ 1.83
PCDHB1Q9Y5F3 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC26.5■■□□□ 1.83
PCDHB1Q9Y5F3 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC26.5■■□□□ 1.83
PCDHB1Q9Y5F3 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC26.49■■□□□ 1.83
PCDHB1Q9Y5F3 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC26.49■■□□□ 1.83
PCDHB1Q9Y5F3 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC26.49■■□□□ 1.83
PCDHB1Q9Y5F3 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
PCDHB1Q9Y5F3 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
PCDHB1Q9Y5F3 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
PCDHB1Q9Y5F3 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
PCDHB1Q9Y5F3 HLA-V-202ENST00000446817 847 ntBASIC26.48■■□□□ 1.83
PCDHB1Q9Y5F3 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC26.48■■□□□ 1.83
PCDHB1Q9Y5F3 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC26.48■■□□□ 1.83
PCDHB1Q9Y5F3 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
PCDHB1Q9Y5F3 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC26.47■■□□□ 1.83
PCDHB1Q9Y5F3 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC26.47■■□□□ 1.83
PCDHB1Q9Y5F3 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC26.47■■□□□ 1.83
PCDHB1Q9Y5F3 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
PCDHB1Q9Y5F3 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC26.46■■□□□ 1.83
PCDHB1Q9Y5F3 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
PCDHB1Q9Y5F3 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
PCDHB1Q9Y5F3 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC26.45■■□□□ 1.82
PCDHB1Q9Y5F3 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC26.45■■□□□ 1.82
PCDHB1Q9Y5F3 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
PCDHB1Q9Y5F3 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
PCDHB1Q9Y5F3 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC26.41■■□□□ 1.82
PCDHB1Q9Y5F3 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC26.41■■□□□ 1.82
PCDHB1Q9Y5F3 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC26.41■■□□□ 1.82
PCDHB1Q9Y5F3 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
PCDHB1Q9Y5F3 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC26.4■■□□□ 1.82
PCDHB1Q9Y5F3 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC26.38■■□□□ 1.81
PCDHB1Q9Y5F3 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC26.38■■□□□ 1.81
PCDHB1Q9Y5F3 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC26.38■■□□□ 1.81
PCDHB1Q9Y5F3 DENR-202ENST00000455982 1052 ntTSL 5 BASIC26.38■■□□□ 1.81
PCDHB1Q9Y5F3 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC26.38■■□□□ 1.81
PCDHB1Q9Y5F3 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC26.38■■□□□ 1.81
PCDHB1Q9Y5F3 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC26.37■■□□□ 1.81
PCDHB1Q9Y5F3 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC26.37■■□□□ 1.81
PCDHB1Q9Y5F3 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
PCDHB1Q9Y5F3 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC26.36■■□□□ 1.81
PCDHB1Q9Y5F3 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC26.36■■□□□ 1.81
PCDHB1Q9Y5F3 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
PCDHB1Q9Y5F3 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC26.36■■□□□ 1.81
PCDHB1Q9Y5F3 ZNRF2P2-203ENST00000454624 420 ntBASIC26.35■■□□□ 1.81
PCDHB1Q9Y5F3 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
PCDHB1Q9Y5F3 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
PCDHB1Q9Y5F3 BOD1-206ENST00000480951 814 ntTSL 2 BASIC26.34■■□□□ 1.81
PCDHB1Q9Y5F3 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC26.32■■□□□ 1.8
PCDHB1Q9Y5F3 ABCB10P1-201ENST00000614297 2181 ntBASIC26.32■■□□□ 1.8
PCDHB1Q9Y5F3 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
PCDHB1Q9Y5F3 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
PCDHB1Q9Y5F3 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC26.31■■□□□ 1.8
PCDHB1Q9Y5F3 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC26.31■■□□□ 1.8
PCDHB1Q9Y5F3 AL135925.1-201ENST00000605920 1701 ntBASIC26.31■■□□□ 1.8
PCDHB1Q9Y5F3 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
PCDHB1Q9Y5F3 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms