Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC25.77■■□□□ 1.72
CUEDC1Q9NWM3 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
CUEDC1Q9NWM3 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
CUEDC1Q9NWM3 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC25.77■■□□□ 1.72
CUEDC1Q9NWM3 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
CUEDC1Q9NWM3 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
CUEDC1Q9NWM3 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
CUEDC1Q9NWM3 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
CUEDC1Q9NWM3 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
CUEDC1Q9NWM3 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC25.73■■□□□ 1.71
CUEDC1Q9NWM3 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
CUEDC1Q9NWM3 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
CUEDC1Q9NWM3 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
CUEDC1Q9NWM3 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC25.72■■□□□ 1.71
CUEDC1Q9NWM3 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
CUEDC1Q9NWM3 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
CUEDC1Q9NWM3 MIR762-201ENST00000390236 83 ntBASIC25.71■■□□□ 1.71
CUEDC1Q9NWM3 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
CUEDC1Q9NWM3 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
CUEDC1Q9NWM3 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
CUEDC1Q9NWM3 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC25.7■■□□□ 1.7
CUEDC1Q9NWM3 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC25.68■■□□□ 1.7
CUEDC1Q9NWM3 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CUEDC1Q9NWM3 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC25.68■■□□□ 1.7
CUEDC1Q9NWM3 AP006261.1-201ENST00000584783 668 ntBASIC25.68■■□□□ 1.7
CUEDC1Q9NWM3 HNRNPLP2-201ENST00000568980 1570 ntBASIC25.68■■□□□ 1.7
CUEDC1Q9NWM3 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CUEDC1Q9NWM3 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC25.67■■□□□ 1.7
CUEDC1Q9NWM3 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC25.67■■□□□ 1.7
CUEDC1Q9NWM3 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC25.66■■□□□ 1.7
CUEDC1Q9NWM3 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
CUEDC1Q9NWM3 CHML-205ENST00000638160 705 ntTSL 3 BASIC25.65■■□□□ 1.7
CUEDC1Q9NWM3 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC25.65■■□□□ 1.7
CUEDC1Q9NWM3 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CUEDC1Q9NWM3 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.69
CUEDC1Q9NWM3 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
CUEDC1Q9NWM3 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC25.63■■□□□ 1.69
CUEDC1Q9NWM3 AL162393.1-201ENST00000437852 946 ntBASIC25.63■■□□□ 1.69
CUEDC1Q9NWM3 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC25.63■■□□□ 1.69
CUEDC1Q9NWM3 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
CUEDC1Q9NWM3 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
CUEDC1Q9NWM3 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC25.62■■□□□ 1.69
CUEDC1Q9NWM3 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC25.62■■□□□ 1.69
CUEDC1Q9NWM3 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC25.62■■□□□ 1.69
CUEDC1Q9NWM3 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC25.61■■□□□ 1.69
CUEDC1Q9NWM3 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
CUEDC1Q9NWM3 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC25.6■■□□□ 1.69
CUEDC1Q9NWM3 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
CUEDC1Q9NWM3 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
CUEDC1Q9NWM3 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
CUEDC1Q9NWM3 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC25.59■■□□□ 1.69
CUEDC1Q9NWM3 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC25.58■■□□□ 1.69
CUEDC1Q9NWM3 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
CUEDC1Q9NWM3 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
CUEDC1Q9NWM3 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
CUEDC1Q9NWM3 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC25.57■■□□□ 1.68
CUEDC1Q9NWM3 AC005559.1-201ENST00000589661 871 ntBASIC25.56■■□□□ 1.68
CUEDC1Q9NWM3 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC25.56■■□□□ 1.68
CUEDC1Q9NWM3 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
CUEDC1Q9NWM3 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC25.55■■□□□ 1.68
CUEDC1Q9NWM3 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
CUEDC1Q9NWM3 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC25.54■■□□□ 1.68
CUEDC1Q9NWM3 NRG1-221ENST00000614767 762 ntTSL 5 BASIC25.54■■□□□ 1.68
CUEDC1Q9NWM3 DUX4L28-201ENST00000623687 678 ntBASIC25.54■■□□□ 1.68
CUEDC1Q9NWM3 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC25.54■■□□□ 1.68
CUEDC1Q9NWM3 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC25.53■■□□□ 1.68
CUEDC1Q9NWM3 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC25.53■■□□□ 1.68
CUEDC1Q9NWM3 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC25.52■■□□□ 1.68
CUEDC1Q9NWM3 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
CUEDC1Q9NWM3 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
CUEDC1Q9NWM3 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
CUEDC1Q9NWM3 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC25.52■■□□□ 1.68
CUEDC1Q9NWM3 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
CUEDC1Q9NWM3 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC25.52■■□□□ 1.68
CUEDC1Q9NWM3 AL135925.1-201ENST00000605920 1701 ntBASIC25.51■■□□□ 1.68
CUEDC1Q9NWM3 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC25.51■■□□□ 1.67
CUEDC1Q9NWM3 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC25.51■■□□□ 1.67
CUEDC1Q9NWM3 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC25.5■■□□□ 1.67
CUEDC1Q9NWM3 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC25.49■■□□□ 1.67
CUEDC1Q9NWM3 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
CUEDC1Q9NWM3 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC25.49■■□□□ 1.67
CUEDC1Q9NWM3 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC25.49■■□□□ 1.67
CUEDC1Q9NWM3 ABCB10P1-201ENST00000614297 2181 ntBASIC25.48■■□□□ 1.67
CUEDC1Q9NWM3 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
CUEDC1Q9NWM3 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
CUEDC1Q9NWM3 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
CUEDC1Q9NWM3 RPS2-209ENST00000529806 993 ntTSL 3 BASIC25.47■■□□□ 1.67
CUEDC1Q9NWM3 MIR3665-201ENST00000578708 105 ntBASIC25.47■■□□□ 1.67
CUEDC1Q9NWM3 MIR7108-201ENST00000614319 87 ntBASIC25.47■■□□□ 1.67
CUEDC1Q9NWM3 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC25.46■■□□□ 1.67
CUEDC1Q9NWM3 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
CUEDC1Q9NWM3 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
CUEDC1Q9NWM3 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
CUEDC1Q9NWM3 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC25.45■■□□□ 1.66
CUEDC1Q9NWM3 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
CUEDC1Q9NWM3 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
CUEDC1Q9NWM3 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC25.44■■□□□ 1.66
CUEDC1Q9NWM3 ST7-AS1-201ENST00000456775 1889 ntBASIC25.44■■□□□ 1.66
CUEDC1Q9NWM3 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
CUEDC1Q9NWM3 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms