Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 DUX4L29-201ENST00000425409 679 ntBASIC26.79■■□□□ 1.88
TM9SF3Q9HD45 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
TM9SF3Q9HD45 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
TM9SF3Q9HD45 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC26.79■■□□□ 1.88
TM9SF3Q9HD45 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.88
TM9SF3Q9HD45 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC26.75■■□□□ 1.87
TM9SF3Q9HD45 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC26.75■■□□□ 1.87
TM9SF3Q9HD45 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC26.75■■□□□ 1.87
TM9SF3Q9HD45 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC26.74■■□□□ 1.87
TM9SF3Q9HD45 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC26.73■■□□□ 1.87
TM9SF3Q9HD45 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC26.72■■□□□ 1.87
TM9SF3Q9HD45 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
TM9SF3Q9HD45 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
TM9SF3Q9HD45 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC26.71■■□□□ 1.87
TM9SF3Q9HD45 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC26.71■■□□□ 1.87
TM9SF3Q9HD45 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
TM9SF3Q9HD45 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
TM9SF3Q9HD45 AC021231.2-201ENST00000594613 730 ntBASIC26.7■■□□□ 1.86
TM9SF3Q9HD45 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
TM9SF3Q9HD45 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC26.69■■□□□ 1.86
TM9SF3Q9HD45 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC26.69■■□□□ 1.86
TM9SF3Q9HD45 CIB2-204ENST00000557846 934 ntTSL 3 BASIC26.69■■□□□ 1.86
TM9SF3Q9HD45 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC26.69■■□□□ 1.86
TM9SF3Q9HD45 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC26.68■■□□□ 1.86
TM9SF3Q9HD45 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC26.67■■□□□ 1.86
TM9SF3Q9HD45 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC26.66■■□□□ 1.86
TM9SF3Q9HD45 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
TM9SF3Q9HD45 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
TM9SF3Q9HD45 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC26.65■■□□□ 1.86
TM9SF3Q9HD45 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
TM9SF3Q9HD45 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
TM9SF3Q9HD45 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
TM9SF3Q9HD45 AC108673.1-201ENST00000510422 1159 ntBASIC26.64■■□□□ 1.86
TM9SF3Q9HD45 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
TM9SF3Q9HD45 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC26.64■■□□□ 1.85
TM9SF3Q9HD45 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
TM9SF3Q9HD45 MIR6090-201ENST00000622481 60 ntBASIC26.63■■□□□ 1.85
TM9SF3Q9HD45 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
TM9SF3Q9HD45 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC26.63■■□□□ 1.85
TM9SF3Q9HD45 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
TM9SF3Q9HD45 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC26.62■■□□□ 1.85
TM9SF3Q9HD45 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
TM9SF3Q9HD45 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC26.62■■□□□ 1.85
TM9SF3Q9HD45 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
TM9SF3Q9HD45 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC26.6■■□□□ 1.85
TM9SF3Q9HD45 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
TM9SF3Q9HD45 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
TM9SF3Q9HD45 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
TM9SF3Q9HD45 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
TM9SF3Q9HD45 RPS2-202ENST00000526522 924 ntTSL 2 BASIC26.59■■□□□ 1.85
TM9SF3Q9HD45 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC26.59■■□□□ 1.85
TM9SF3Q9HD45 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
TM9SF3Q9HD45 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
TM9SF3Q9HD45 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
TM9SF3Q9HD45 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC26.58■■□□□ 1.85
TM9SF3Q9HD45 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
TM9SF3Q9HD45 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC26.57■■□□□ 1.84
TM9SF3Q9HD45 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
TM9SF3Q9HD45 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC26.56■■□□□ 1.84
TM9SF3Q9HD45 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
TM9SF3Q9HD45 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
TM9SF3Q9HD45 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC26.55■■□□□ 1.84
TM9SF3Q9HD45 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC26.55■■□□□ 1.84
TM9SF3Q9HD45 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC26.55■■□□□ 1.84
TM9SF3Q9HD45 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC26.55■■□□□ 1.84
TM9SF3Q9HD45 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC26.54■■□□□ 1.84
TM9SF3Q9HD45 MACF1-219ENST00000484793 834 ntTSL 2 BASIC26.52■■□□□ 1.84
TM9SF3Q9HD45 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
TM9SF3Q9HD45 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
TM9SF3Q9HD45 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
TM9SF3Q9HD45 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC26.49■■□□□ 1.83
TM9SF3Q9HD45 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
TM9SF3Q9HD45 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC26.48■■□□□ 1.83
TM9SF3Q9HD45 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC26.48■■□□□ 1.83
TM9SF3Q9HD45 MIR639-201ENST00000384974 98 ntBASIC26.48■■□□□ 1.83
TM9SF3Q9HD45 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC26.48■■□□□ 1.83
TM9SF3Q9HD45 RNF166-209ENST00000567844 633 ntTSL 5 BASIC26.48■■□□□ 1.83
TM9SF3Q9HD45 MIR4449-201ENST00000578365 66 ntBASIC26.48■■□□□ 1.83
TM9SF3Q9HD45 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
TM9SF3Q9HD45 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
TM9SF3Q9HD45 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
TM9SF3Q9HD45 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC26.46■■□□□ 1.83
TM9SF3Q9HD45 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC26.46■■□□□ 1.83
TM9SF3Q9HD45 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC26.45■■□□□ 1.83
TM9SF3Q9HD45 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
TM9SF3Q9HD45 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC26.45■■□□□ 1.82
TM9SF3Q9HD45 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
TM9SF3Q9HD45 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC26.44■■□□□ 1.82
TM9SF3Q9HD45 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC26.43■■□□□ 1.82
TM9SF3Q9HD45 MIR3648-2-201ENST00000581792 180 ntBASIC26.43■■□□□ 1.82
TM9SF3Q9HD45 MIR3648-1-201ENST00000615959 180 ntBASIC26.43■■□□□ 1.82
TM9SF3Q9HD45 AC016575.1-201ENST00000607026 382 ntBASIC26.42■■□□□ 1.82
TM9SF3Q9HD45 GDI1-215ENST00000630693 786 ntTSL 4 BASIC26.42■■□□□ 1.82
TM9SF3Q9HD45 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
TM9SF3Q9HD45 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
TM9SF3Q9HD45 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
TM9SF3Q9HD45 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
TM9SF3Q9HD45 LINC01971-201ENST00000617888 1048 ntBASIC26.41■■□□□ 1.82
TM9SF3Q9HD45 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC26.4■■□□□ 1.82
TM9SF3Q9HD45 DUX4L11-201ENST00000611504 1267 ntBASIC26.4■■□□□ 1.82
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms