Protein–RNA interactions for Protein: Q96EY7

PTCD3, Pentatricopeptide repeat domain-containing protein 3, mitochondrial, humanhuman

Known RBP Predictions only

Length 689 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3Q96EY7 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC26.41■■□□□ 1.82
PTCD3Q96EY7 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC26.4■■□□□ 1.82
PTCD3Q96EY7 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
PTCD3Q96EY7 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC26.4■■□□□ 1.82
PTCD3Q96EY7 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC26.39■■□□□ 1.82
PTCD3Q96EY7 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
PTCD3Q96EY7 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC26.38■■□□□ 1.81
PTCD3Q96EY7 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
PTCD3Q96EY7 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC26.35■■□□□ 1.81
PTCD3Q96EY7 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
PTCD3Q96EY7 KLF16-203ENST00000592313 508 ntTSL 3 BASIC26.34■■□□□ 1.81
PTCD3Q96EY7 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
PTCD3Q96EY7 ST7-AS1-201ENST00000456775 1889 ntBASIC26.33■■□□□ 1.81
PTCD3Q96EY7 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
PTCD3Q96EY7 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC26.32■■□□□ 1.8
PTCD3Q96EY7 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
PTCD3Q96EY7 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
PTCD3Q96EY7 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
PTCD3Q96EY7 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
PTCD3Q96EY7 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC26.31■■□□□ 1.8
PTCD3Q96EY7 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
PTCD3Q96EY7 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC26.3■■□□□ 1.8
PTCD3Q96EY7 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
PTCD3Q96EY7 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
PTCD3Q96EY7 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC26.29■■□□□ 1.8
PTCD3Q96EY7 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
PTCD3Q96EY7 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
PTCD3Q96EY7 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC26.27■■□□□ 1.8
PTCD3Q96EY7 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
PTCD3Q96EY7 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
PTCD3Q96EY7 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC26.25■■□□□ 1.79
PTCD3Q96EY7 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
PTCD3Q96EY7 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC26.25■■□□□ 1.79
PTCD3Q96EY7 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC26.25■■□□□ 1.79
PTCD3Q96EY7 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
PTCD3Q96EY7 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC26.23■■□□□ 1.79
PTCD3Q96EY7 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC26.22■■□□□ 1.79
PTCD3Q96EY7 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC26.21■■□□□ 1.79
PTCD3Q96EY7 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
PTCD3Q96EY7 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
PTCD3Q96EY7 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.79
PTCD3Q96EY7 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC26.2■■□□□ 1.78
PTCD3Q96EY7 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC26.2■■□□□ 1.78
PTCD3Q96EY7 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC26.19■■□□□ 1.78
PTCD3Q96EY7 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC26.19■■□□□ 1.78
PTCD3Q96EY7 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
PTCD3Q96EY7 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC26.17■■□□□ 1.78
PTCD3Q96EY7 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC26.17■■□□□ 1.78
PTCD3Q96EY7 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC26.16■■□□□ 1.78
PTCD3Q96EY7 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC26.16■■□□□ 1.78
PTCD3Q96EY7 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
PTCD3Q96EY7 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC26.15■■□□□ 1.78
PTCD3Q96EY7 AC142086.6-201ENST00000621154 1765 ntBASIC26.15■■□□□ 1.78
PTCD3Q96EY7 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC26.14■■□□□ 1.78
PTCD3Q96EY7 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
PTCD3Q96EY7 AL133380.1-201ENST00000506013 324 ntBASIC26.14■■□□□ 1.78
PTCD3Q96EY7 RARRES2P7-201ENST00000567349 469 ntBASIC26.14■■□□□ 1.78
PTCD3Q96EY7 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
PTCD3Q96EY7 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC26.13■■□□□ 1.77
PTCD3Q96EY7 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC26.13■■□□□ 1.77
PTCD3Q96EY7 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC26.13■■□□□ 1.77
PTCD3Q96EY7 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
PTCD3Q96EY7 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC26.12■■□□□ 1.77
PTCD3Q96EY7 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
PTCD3Q96EY7 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC26.12■■□□□ 1.77
PTCD3Q96EY7 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC26.11■■□□□ 1.77
PTCD3Q96EY7 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC26.1■■□□□ 1.77
PTCD3Q96EY7 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC26.1■■□□□ 1.77
PTCD3Q96EY7 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
PTCD3Q96EY7 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
PTCD3Q96EY7 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
PTCD3Q96EY7 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
PTCD3Q96EY7 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC26.07■■□□□ 1.76
PTCD3Q96EY7 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC26.07■■□□□ 1.76
PTCD3Q96EY7 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC26.06■■□□□ 1.76
PTCD3Q96EY7 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
PTCD3Q96EY7 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
PTCD3Q96EY7 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
PTCD3Q96EY7 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
PTCD3Q96EY7 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
PTCD3Q96EY7 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC26.05■■□□□ 1.76
PTCD3Q96EY7 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
PTCD3Q96EY7 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
PTCD3Q96EY7 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
PTCD3Q96EY7 SETD8P1-201ENST00000623146 1180 ntBASIC26.04■■□□□ 1.76
PTCD3Q96EY7 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
PTCD3Q96EY7 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
PTCD3Q96EY7 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
PTCD3Q96EY7 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC26.02■■□□□ 1.76
PTCD3Q96EY7 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC26.02■■□□□ 1.76
PTCD3Q96EY7 WASH5P-204ENST00000632292 975 ntBASIC26.02■■□□□ 1.76
PTCD3Q96EY7 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC26.02■■□□□ 1.76
PTCD3Q96EY7 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC26.02■■□□□ 1.76
PTCD3Q96EY7 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
PTCD3Q96EY7 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC26.02■■□□□ 1.76
PTCD3Q96EY7 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
PTCD3Q96EY7 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC26■■□□□ 1.75
PTCD3Q96EY7 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
PTCD3Q96EY7 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
PTCD3Q96EY7 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms