Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC30.81■■■□□ 2.52
SH3RF1Q7Z6J0 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC30.81■■■□□ 2.52
SH3RF1Q7Z6J0 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
SH3RF1Q7Z6J0 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC30.8■■■□□ 2.52
SH3RF1Q7Z6J0 ZNRF2P2-203ENST00000454624 420 ntBASIC30.8■■■□□ 2.52
SH3RF1Q7Z6J0 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC30.79■■■□□ 2.52
SH3RF1Q7Z6J0 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
SH3RF1Q7Z6J0 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC30.79■■■□□ 2.52
SH3RF1Q7Z6J0 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC30.78■■■□□ 2.52
SH3RF1Q7Z6J0 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC30.77■■■□□ 2.52
SH3RF1Q7Z6J0 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC30.77■■■□□ 2.52
SH3RF1Q7Z6J0 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC30.77■■■□□ 2.52
SH3RF1Q7Z6J0 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC30.77■■■□□ 2.52
SH3RF1Q7Z6J0 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
SH3RF1Q7Z6J0 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC30.76■■■□□ 2.51
SH3RF1Q7Z6J0 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
SH3RF1Q7Z6J0 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC30.76■■■□□ 2.51
SH3RF1Q7Z6J0 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC30.75■■■□□ 2.51
SH3RF1Q7Z6J0 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC30.74■■■□□ 2.51
SH3RF1Q7Z6J0 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
SH3RF1Q7Z6J0 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
SH3RF1Q7Z6J0 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC30.7■■■□□ 2.5
SH3RF1Q7Z6J0 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
SH3RF1Q7Z6J0 BOD1-206ENST00000480951 814 ntTSL 2 BASIC30.69■■■□□ 2.5
SH3RF1Q7Z6J0 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC30.68■■■□□ 2.5
SH3RF1Q7Z6J0 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC30.67■■■□□ 2.5
SH3RF1Q7Z6J0 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
SH3RF1Q7Z6J0 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
SH3RF1Q7Z6J0 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC30.66■■■□□ 2.5
SH3RF1Q7Z6J0 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
SH3RF1Q7Z6J0 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
SH3RF1Q7Z6J0 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
SH3RF1Q7Z6J0 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC30.65■■■□□ 2.5
SH3RF1Q7Z6J0 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC30.64■■■□□ 2.5
SH3RF1Q7Z6J0 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
SH3RF1Q7Z6J0 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
SH3RF1Q7Z6J0 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
SH3RF1Q7Z6J0 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC30.62■■■□□ 2.49
SH3RF1Q7Z6J0 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
SH3RF1Q7Z6J0 HGH1-207ENST00000628266 258 ntTSL 5 BASIC30.62■■■□□ 2.49
SH3RF1Q7Z6J0 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC30.62■■■□□ 2.49
SH3RF1Q7Z6J0 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC30.61■■■□□ 2.49
SH3RF1Q7Z6J0 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
SH3RF1Q7Z6J0 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
SH3RF1Q7Z6J0 DENR-202ENST00000455982 1052 ntTSL 5 BASIC30.6■■■□□ 2.49
SH3RF1Q7Z6J0 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
SH3RF1Q7Z6J0 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
SH3RF1Q7Z6J0 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC30.58■■■□□ 2.49
SH3RF1Q7Z6J0 RPS2-202ENST00000526522 924 ntTSL 2 BASIC30.58■■■□□ 2.49
SH3RF1Q7Z6J0 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC30.57■■■□□ 2.48
SH3RF1Q7Z6J0 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
SH3RF1Q7Z6J0 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
SH3RF1Q7Z6J0 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC30.56■■■□□ 2.48
SH3RF1Q7Z6J0 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
SH3RF1Q7Z6J0 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
SH3RF1Q7Z6J0 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC30.55■■■□□ 2.48
SH3RF1Q7Z6J0 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
SH3RF1Q7Z6J0 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
SH3RF1Q7Z6J0 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
SH3RF1Q7Z6J0 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC30.51■■■□□ 2.47
SH3RF1Q7Z6J0 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC30.51■■■□□ 2.47
SH3RF1Q7Z6J0 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC30.5■■■□□ 2.47
SH3RF1Q7Z6J0 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
SH3RF1Q7Z6J0 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC30.49■■■□□ 2.47
SH3RF1Q7Z6J0 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
SH3RF1Q7Z6J0 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC30.47■■■□□ 2.47
SH3RF1Q7Z6J0 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC30.47■■■□□ 2.47
SH3RF1Q7Z6J0 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC30.46■■■□□ 2.47
SH3RF1Q7Z6J0 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
SH3RF1Q7Z6J0 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
SH3RF1Q7Z6J0 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC30.46■■■□□ 2.47
SH3RF1Q7Z6J0 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC30.45■■■□□ 2.47
SH3RF1Q7Z6J0 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC30.45■■■□□ 2.46
SH3RF1Q7Z6J0 MIR4449-201ENST00000578365 66 ntBASIC30.42■■■□□ 2.46
SH3RF1Q7Z6J0 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
SH3RF1Q7Z6J0 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
SH3RF1Q7Z6J0 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
SH3RF1Q7Z6J0 DUX4L29-201ENST00000425409 679 ntBASIC30.38■■■□□ 2.45
SH3RF1Q7Z6J0 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
SH3RF1Q7Z6J0 WASH5P-204ENST00000632292 975 ntBASIC30.36■■■□□ 2.45
SH3RF1Q7Z6J0 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC30.36■■■□□ 2.45
SH3RF1Q7Z6J0 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC30.35■■■□□ 2.45
SH3RF1Q7Z6J0 ABCB10P1-201ENST00000614297 2181 ntBASIC30.35■■■□□ 2.45
SH3RF1Q7Z6J0 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
SH3RF1Q7Z6J0 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC30.33■■■□□ 2.45
SH3RF1Q7Z6J0 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
SH3RF1Q7Z6J0 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
SH3RF1Q7Z6J0 RPS2-209ENST00000529806 993 ntTSL 3 BASIC30.33■■■□□ 2.45
SH3RF1Q7Z6J0 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC30.32■■■□□ 2.44
SH3RF1Q7Z6J0 MIR639-201ENST00000384974 98 ntBASIC30.32■■■□□ 2.44
SH3RF1Q7Z6J0 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC30.31■■■□□ 2.44
SH3RF1Q7Z6J0 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC30.3■■■□□ 2.44
SH3RF1Q7Z6J0 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
SH3RF1Q7Z6J0 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC30.29■■■□□ 2.44
SH3RF1Q7Z6J0 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC30.29■■■□□ 2.44
SH3RF1Q7Z6J0 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
SH3RF1Q7Z6J0 AC021231.2-201ENST00000594613 730 ntBASIC30.28■■■□□ 2.44
SH3RF1Q7Z6J0 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
SH3RF1Q7Z6J0 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC30.27■■■□□ 2.44
SH3RF1Q7Z6J0 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms