Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
KRT40Q6A162 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
KRT40Q6A162 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
KRT40Q6A162 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC30.89■■■□□ 2.53
KRT40Q6A162 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC30.89■■■□□ 2.53
KRT40Q6A162 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
KRT40Q6A162 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC30.87■■■□□ 2.53
KRT40Q6A162 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
KRT40Q6A162 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
KRT40Q6A162 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
KRT40Q6A162 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC30.86■■■□□ 2.53
KRT40Q6A162 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC30.86■■■□□ 2.53
KRT40Q6A162 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC30.85■■■□□ 2.53
KRT40Q6A162 CAHM-201ENST00000604200 896 ntBASIC30.84■■■□□ 2.53
KRT40Q6A162 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
KRT40Q6A162 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC30.83■■■□□ 2.53
KRT40Q6A162 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC30.83■■■□□ 2.53
KRT40Q6A162 AL391121.1-201ENST00000607967 1349 ntBASIC30.82■■■□□ 2.52
KRT40Q6A162 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
KRT40Q6A162 AL162393.1-201ENST00000437852 946 ntBASIC30.82■■■□□ 2.52
KRT40Q6A162 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC30.82■■■□□ 2.52
KRT40Q6A162 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
KRT40Q6A162 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC30.81■■■□□ 2.52
KRT40Q6A162 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
KRT40Q6A162 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
KRT40Q6A162 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC30.79■■■□□ 2.52
KRT40Q6A162 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
KRT40Q6A162 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
KRT40Q6A162 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
KRT40Q6A162 NRG1-221ENST00000614767 762 ntTSL 5 BASIC30.77■■■□□ 2.52
KRT40Q6A162 ST7-AS1-201ENST00000456775 1889 ntBASIC30.76■■■□□ 2.52
KRT40Q6A162 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC30.76■■■□□ 2.51
KRT40Q6A162 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
KRT40Q6A162 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
KRT40Q6A162 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC30.74■■■□□ 2.51
KRT40Q6A162 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
KRT40Q6A162 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC30.74■■■□□ 2.51
KRT40Q6A162 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
KRT40Q6A162 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC30.74■■■□□ 2.51
KRT40Q6A162 AL135925.1-201ENST00000605920 1701 ntBASIC30.73■■■□□ 2.51
KRT40Q6A162 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC30.73■■■□□ 2.51
KRT40Q6A162 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
KRT40Q6A162 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC30.73■■■□□ 2.51
KRT40Q6A162 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
KRT40Q6A162 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC30.72■■■□□ 2.51
KRT40Q6A162 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC30.72■■■□□ 2.51
KRT40Q6A162 EBPL-202ENST00000378268 680 ntTSL 3 BASIC30.71■■■□□ 2.51
KRT40Q6A162 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC30.71■■■□□ 2.51
KRT40Q6A162 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC30.71■■■□□ 2.51
KRT40Q6A162 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC30.71■■■□□ 2.51
KRT40Q6A162 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC30.7■■■□□ 2.51
KRT40Q6A162 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC30.7■■■□□ 2.51
KRT40Q6A162 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC30.7■■■□□ 2.5
KRT40Q6A162 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
KRT40Q6A162 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
KRT40Q6A162 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
KRT40Q6A162 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC30.69■■■□□ 2.5
KRT40Q6A162 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
KRT40Q6A162 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
KRT40Q6A162 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
KRT40Q6A162 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
KRT40Q6A162 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC30.66■■■□□ 2.5
KRT40Q6A162 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC30.66■■■□□ 2.5
KRT40Q6A162 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
KRT40Q6A162 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
KRT40Q6A162 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
KRT40Q6A162 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
KRT40Q6A162 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
KRT40Q6A162 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
KRT40Q6A162 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC30.62■■■□□ 2.49
KRT40Q6A162 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
KRT40Q6A162 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC30.61■■■□□ 2.49
KRT40Q6A162 DENR-202ENST00000455982 1052 ntTSL 5 BASIC30.61■■■□□ 2.49
KRT40Q6A162 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
KRT40Q6A162 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
KRT40Q6A162 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC30.6■■■□□ 2.49
KRT40Q6A162 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
KRT40Q6A162 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
KRT40Q6A162 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC30.59■■■□□ 2.49
KRT40Q6A162 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC30.59■■■□□ 2.49
KRT40Q6A162 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
KRT40Q6A162 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC30.58■■■□□ 2.49
KRT40Q6A162 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC30.58■■■□□ 2.49
KRT40Q6A162 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
KRT40Q6A162 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
KRT40Q6A162 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC30.56■■■□□ 2.48
KRT40Q6A162 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
KRT40Q6A162 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
KRT40Q6A162 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC30.56■■■□□ 2.48
KRT40Q6A162 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
KRT40Q6A162 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC30.56■■■□□ 2.48
KRT40Q6A162 ABCB10P3-201ENST00000561950 2166 ntBASIC30.55■■■□□ 2.48
KRT40Q6A162 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
KRT40Q6A162 AP006261.1-201ENST00000584783 668 ntBASIC30.55■■■□□ 2.48
KRT40Q6A162 MIR7108-201ENST00000614319 87 ntBASIC30.55■■■□□ 2.48
KRT40Q6A162 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
KRT40Q6A162 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
KRT40Q6A162 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC30.54■■■□□ 2.48
KRT40Q6A162 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
KRT40Q6A162 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms