Protein–RNA interactions for Protein: P61009

SPCS3, Signal peptidase complex subunit 3, humanhuman

Predictions only

Length 180 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPCS3P61009 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SPCS3P61009 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
SPCS3P61009 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SPCS3P61009 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
SPCS3P61009 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SPCS3P61009 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC21.48■■□□□ 1.03
SPCS3P61009 AL031258.1-201ENST00000623562 325 ntBASIC21.48■■□□□ 1.03
SPCS3P61009 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SPCS3P61009 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
SPCS3P61009 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SPCS3P61009 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SPCS3P61009 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
SPCS3P61009 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC21.46■■□□□ 1.03
SPCS3P61009 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC21.46■■□□□ 1.03
SPCS3P61009 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
SPCS3P61009 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
SPCS3P61009 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SPCS3P61009 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SPCS3P61009 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SPCS3P61009 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC21.44■■□□□ 1.02
SPCS3P61009 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SPCS3P61009 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SPCS3P61009 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
SPCS3P61009 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC21.43■■□□□ 1.02
SPCS3P61009 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SPCS3P61009 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
SPCS3P61009 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
SPCS3P61009 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
SPCS3P61009 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SPCS3P61009 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC21.41■■□□□ 1.02
SPCS3P61009 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SPCS3P61009 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
SPCS3P61009 AL135925.1-201ENST00000605920 1701 ntBASIC21.39■■□□□ 1.01
SPCS3P61009 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SPCS3P61009 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SPCS3P61009 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
SPCS3P61009 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SPCS3P61009 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SPCS3P61009 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SPCS3P61009 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC21.36■■□□□ 1.01
SPCS3P61009 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC21.35■■□□□ 1.01
SPCS3P61009 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
SPCS3P61009 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SPCS3P61009 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SPCS3P61009 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC21.34■■□□□ 1.01
SPCS3P61009 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
SPCS3P61009 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1.01
SPCS3P61009 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
SPCS3P61009 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SPCS3P61009 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC21.32■■□□□ 1
SPCS3P61009 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
SPCS3P61009 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SPCS3P61009 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
SPCS3P61009 AP002365.1-201ENST00000603448 772 ntBASIC21.31■■□□□ 1
SPCS3P61009 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC21.3■■□□□ 1
SPCS3P61009 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC21.3■■□□□ 1
SPCS3P61009 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
SPCS3P61009 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC21.29■■□□□ 1
SPCS3P61009 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SPCS3P61009 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SPCS3P61009 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC21.29■■□□□ 1
SPCS3P61009 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SPCS3P61009 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC21.28■■□□□ 1
SPCS3P61009 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC21.28■■□□□ 1
SPCS3P61009 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SPCS3P61009 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SPCS3P61009 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC21.27■□□□□ 0.99
SPCS3P61009 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SPCS3P61009 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SPCS3P61009 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC21.24■□□□□ 0.99
SPCS3P61009 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SPCS3P61009 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SPCS3P61009 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC21.24■□□□□ 0.99
SPCS3P61009 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SPCS3P61009 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SPCS3P61009 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SPCS3P61009 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
SPCS3P61009 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
SPCS3P61009 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SPCS3P61009 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SPCS3P61009 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
SPCS3P61009 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SPCS3P61009 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC21.21■□□□□ 0.99
SPCS3P61009 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
SPCS3P61009 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
SPCS3P61009 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SPCS3P61009 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
SPCS3P61009 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
SPCS3P61009 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SPCS3P61009 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC21.19■□□□□ 0.98
SPCS3P61009 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SPCS3P61009 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
SPCS3P61009 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC21.19■□□□□ 0.98
SPCS3P61009 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SPCS3P61009 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
SPCS3P61009 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC21.18■□□□□ 0.98
SPCS3P61009 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SPCS3P61009 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SPCS3P61009 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SPCS3P61009 AC142086.6-201ENST00000621154 1765 ntBASIC21.18■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms