Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC34.56■■■■□ 3.12
COL17A1Q9UMD9 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC34.55■■■■□ 3.12
COL17A1Q9UMD9 SHF-208ENST00000560734 1731 ntTSL 3 BASIC34.55■■■■□ 3.12
COL17A1Q9UMD9 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC34.55■■■■□ 3.12
COL17A1Q9UMD9 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC34.55■■■■□ 3.12
COL17A1Q9UMD9 TSPY6P-201ENST00000448518 926 ntBASIC34.55■■■■□ 3.12
COL17A1Q9UMD9 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC34.55■■■■□ 3.12
COL17A1Q9UMD9 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC34.55■■■■□ 3.12
COL17A1Q9UMD9 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC34.54■■■■□ 3.12
COL17A1Q9UMD9 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC34.54■■■■□ 3.12
COL17A1Q9UMD9 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC34.54■■■■□ 3.12
COL17A1Q9UMD9 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC34.54■■■■□ 3.12
COL17A1Q9UMD9 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC34.54■■■■□ 3.12
COL17A1Q9UMD9 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC34.53■■■■□ 3.12
COL17A1Q9UMD9 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC34.53■■■■□ 3.12
COL17A1Q9UMD9 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC34.53■■■■□ 3.12
COL17A1Q9UMD9 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC34.53■■■■□ 3.12
COL17A1Q9UMD9 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC34.53■■■■□ 3.12
COL17A1Q9UMD9 AC011767.1-201ENST00000617410 1153 ntBASIC34.53■■■■□ 3.12
COL17A1Q9UMD9 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC34.53■■■■□ 3.12
COL17A1Q9UMD9 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC34.53■■■■□ 3.12
COL17A1Q9UMD9 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC34.52■■■■□ 3.12
COL17A1Q9UMD9 COX20-201ENST00000366528 568 ntTSL 2 BASIC34.52■■■■□ 3.12
COL17A1Q9UMD9 SLC7A5P2-201ENST00000553010 536 ntBASIC34.52■■■■□ 3.12
COL17A1Q9UMD9 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC34.52■■■■□ 3.12
COL17A1Q9UMD9 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC34.52■■■■□ 3.12
COL17A1Q9UMD9 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC34.52■■■■□ 3.12
COL17A1Q9UMD9 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC34.52■■■■□ 3.12
COL17A1Q9UMD9 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC34.52■■■■□ 3.12
COL17A1Q9UMD9 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC34.52■■■■□ 3.12
COL17A1Q9UMD9 AL138781.1-201ENST00000566567 1274 ntBASIC34.52■■■■□ 3.12
COL17A1Q9UMD9 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC34.51■■■■□ 3.12
COL17A1Q9UMD9 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC34.51■■■■□ 3.12
COL17A1Q9UMD9 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC34.51■■■■□ 3.11
COL17A1Q9UMD9 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC34.51■■■■□ 3.11
COL17A1Q9UMD9 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC34.51■■■■□ 3.11
COL17A1Q9UMD9 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC34.5■■■■□ 3.11
COL17A1Q9UMD9 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC34.5■■■■□ 3.11
COL17A1Q9UMD9 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC34.5■■■■□ 3.11
COL17A1Q9UMD9 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC34.5■■■■□ 3.11
COL17A1Q9UMD9 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC34.5■■■■□ 3.11
COL17A1Q9UMD9 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC34.49■■■■□ 3.11
COL17A1Q9UMD9 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC34.49■■■■□ 3.11
COL17A1Q9UMD9 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC34.49■■■■□ 3.11
COL17A1Q9UMD9 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC34.49■■■■□ 3.11
COL17A1Q9UMD9 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC34.49■■■■□ 3.11
COL17A1Q9UMD9 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC34.49■■■■□ 3.11
COL17A1Q9UMD9 AC105233.4-201ENST00000642045 216 ntBASIC34.49■■■■□ 3.11
COL17A1Q9UMD9 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC34.49■■■■□ 3.11
COL17A1Q9UMD9 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC34.49■■■■□ 3.11
COL17A1Q9UMD9 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC34.48■■■■□ 3.11
COL17A1Q9UMD9 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC34.48■■■■□ 3.11
COL17A1Q9UMD9 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC34.48■■■■□ 3.11
COL17A1Q9UMD9 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC34.48■■■■□ 3.11
COL17A1Q9UMD9 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC34.48■■■■□ 3.11
COL17A1Q9UMD9 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC34.47■■■■□ 3.11
COL17A1Q9UMD9 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC34.47■■■■□ 3.11
COL17A1Q9UMD9 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC34.47■■■■□ 3.11
COL17A1Q9UMD9 AC087239.1-201ENST00000622671 572 ntBASIC34.47■■■■□ 3.11
COL17A1Q9UMD9 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC34.47■■■■□ 3.11
COL17A1Q9UMD9 AC141586.4-201ENST00000624558 1573 ntBASIC34.47■■■■□ 3.11
COL17A1Q9UMD9 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC34.47■■■■□ 3.11
COL17A1Q9UMD9 AC133637.1-201ENST00000624115 1537 ntBASIC34.47■■■■□ 3.11
COL17A1Q9UMD9 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC34.46■■■■□ 3.11
COL17A1Q9UMD9 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC34.46■■■■□ 3.11
COL17A1Q9UMD9 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC34.46■■■■□ 3.11
COL17A1Q9UMD9 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC34.46■■■■□ 3.11
COL17A1Q9UMD9 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC34.46■■■■□ 3.11
COL17A1Q9UMD9 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC34.46■■■■□ 3.11
COL17A1Q9UMD9 OR2I1P-207ENST00000453522 948 ntBASIC34.46■■■■□ 3.11
COL17A1Q9UMD9 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC34.46■■■■□ 3.11
COL17A1Q9UMD9 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC34.46■■■■□ 3.11
COL17A1Q9UMD9 TFG-210ENST00000620299 1289 ntTSL 5 BASIC34.46■■■■□ 3.11
COL17A1Q9UMD9 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC34.45■■■■□ 3.11
COL17A1Q9UMD9 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC34.45■■■■□ 3.1
COL17A1Q9UMD9 AL121832.2-201ENST00000610979 668 ntBASIC34.45■■■■□ 3.1
COL17A1Q9UMD9 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC34.45■■■■□ 3.1
COL17A1Q9UMD9 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC34.44■■■■□ 3.1
COL17A1Q9UMD9 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC34.44■■■■□ 3.1
COL17A1Q9UMD9 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC34.44■■■■□ 3.1
COL17A1Q9UMD9 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC34.43■■■■□ 3.1
COL17A1Q9UMD9 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC34.43■■■■□ 3.1
COL17A1Q9UMD9 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC34.43■■■■□ 3.1
COL17A1Q9UMD9 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC34.43■■■■□ 3.1
COL17A1Q9UMD9 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC34.43■■■■□ 3.1
COL17A1Q9UMD9 USF2-207ENST00000595068 1612 ntTSL 5 BASIC34.43■■■■□ 3.1
COL17A1Q9UMD9 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC34.43■■■■□ 3.1
COL17A1Q9UMD9 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC34.42■■■■□ 3.1
COL17A1Q9UMD9 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC34.42■■■■□ 3.1
COL17A1Q9UMD9 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC34.42■■■■□ 3.1
COL17A1Q9UMD9 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC34.41■■■■□ 3.1
COL17A1Q9UMD9 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC34.41■■■■□ 3.1
COL17A1Q9UMD9 FAM201B-201ENST00000458407 597 ntBASIC34.41■■■■□ 3.1
COL17A1Q9UMD9 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC34.41■■■■□ 3.1
COL17A1Q9UMD9 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC34.41■■■■□ 3.1
COL17A1Q9UMD9 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC34.41■■■■□ 3.1
COL17A1Q9UMD9 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC34.41■■■■□ 3.1
COL17A1Q9UMD9 METTL15-202ENST00000403099 795 ntTSL 5 BASIC34.4■■■■□ 3.1
COL17A1Q9UMD9 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC34.4■■■■□ 3.1
COL17A1Q9UMD9 AC083906.2-201ENST00000511578 360 ntBASIC34.4■■■■□ 3.1
Retrieved 100 of 98,524 protein–RNA pairs in 10.2 ms