RNA–Protein interactions for RNA: ENST00000616010.4

CCND3-223, Transcript of cyclin D3, humanhuman

TSL 5 BASIC

Gene CCND3, Length 2,047 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCND3-223ENST00000616010 NISCHQ9Y2I1 1504 aa54.33■■■■■ 6.29
CCND3-223ENST00000616010 CCDC180Q9P1Z9 1646 aa47.68■■■■■ 5.22
CCND3-223ENST00000616010 ZCCHC6Q5VYS8 1495 aaKnown RBP45.57■■■■■ 4.88
CCND3-223ENST00000616010 ABCC9O60706 1549 aa45.49■■■■■ 4.87
CCND3-223ENST00000616010 DCAF8L2P0C7V8 631 aa44.97■■■■■ 4.79
CCND3-223ENST00000616010 DCAF1Q9Y4B6 1507 aa44.92■■■■■ 4.78
CCND3-223ENST00000616010 MYO15BQ96JP2 1530 aa44.58■■■■■ 4.73
CCND3-223ENST00000616010 NACADO15069 1562 aa44.48■■■■■ 4.71
CCND3-223ENST00000616010 RB1CC1Q8TDY2 1594 aa44.24■■■■■ 4.67
CCND3-223ENST00000616010 SHROOM4Q9ULL8 1493 aa43.95■■■■■ 4.63
CCND3-223ENST00000616010 SCRIBQ14160 1630 aa43.77■■■■■ 4.6
CCND3-223ENST00000616010 UNC13AQ9UPW8 1703 aa43.37■■■■■ 4.53
CCND3-223ENST00000616010 BICRAQ9NZM4 1560 aa42.91■■■■■ 4.46
CCND3-223ENST00000616010 PABPN1Q86U42 306 aaKnown RBP eCLIP42.75■■■■■ 4.43
CCND3-223ENST00000616010 CECR2Q9BXF3 1484 aa42.25■■■■■ 4.35
CCND3-223ENST00000616010 BAZ1AQ9NRL2 1556 aaPredicted RBP42.01■■■■■ 4.32
CCND3-223ENST00000616010 SUPT5HO00267 1087 aaKnown RBP41.99■■■■■ 4.31
CCND3-223ENST00000616010 MROH2BQ7Z745 1585 aa41.96■■■■■ 4.31
CCND3-223ENST00000616010 RSF1Q96T23 1441 aaPredicted RBP41.92■■■■■ 4.3
CCND3-223ENST00000616010 SMARCA4P51532 1647 aa41.91■■■■■ 4.3
CCND3-223ENST00000616010 EIF4G1Q04637 1599 aaKnown RBP41.67■■■■■ 4.26
CCND3-223ENST00000616010 WIZO95785 1651 aa41.62■■■■■ 4.25
CCND3-223ENST00000616010 PEG3Q9GZU2 1588 aa41.41■■■■■ 4.22
CCND3-223ENST00000616010 ATAD2BQ9ULI0 1458 aa41.3■■■■■ 4.2
CCND3-223ENST00000616010 SMARCA2P51531 1590 aa41.3■■■■■ 4.2
CCND3-223ENST00000616010 CC2D2AQ9P2K1 1620 aa41.18■■■■■ 4.18
CCND3-223ENST00000616010 TOP2AP11388 1531 aaKnown RBP41.18■■■■■ 4.18
CCND3-223ENST00000616010 BAZ1BQ9UIG0 1483 aaKnown RBP41.08■■■■■ 4.17
CCND3-223ENST00000616010 NCAPD3P42695 1498 aa41.02■■■■■ 4.16
CCND3-223ENST00000616010 HMGXB3Q12766 1538 aa40.98■■■■■ 4.15
CCND3-223ENST00000616010 CCDC88BA6NC98 1476 aa40.69■■■■■ 4.1
CCND3-223ENST00000616010 DNAJC5BQ9UF47 199 aa40.5■■■■■ 4.07
CCND3-223ENST00000616010 CFTRP13569 1480 aa39.99■■■■□ 3.99
CCND3-223ENST00000616010 CADPSQ9ULU8 1353 aa39.93■■■■□ 3.98
CCND3-223ENST00000616010 CHIC1Q5VXU3 224 aa39.9■■■■□ 3.98
CCND3-223ENST00000616010 PRDM2Q13029 1718 aa39.85■■■■□ 3.97
CCND3-223ENST00000616010 NESP48681 1621 aa39.78■■■■□ 3.96
CCND3-223ENST00000616010 LAMC3Q9Y6N6 1575 aa39.76■■■■□ 3.96
CCND3-223ENST00000616010 ABCC8Q09428 1581 aa39.73■■■■□ 3.95
CCND3-223ENST00000616010 FANCD2Q9BXW9 1451 aa39.52■■■■□ 3.92
CCND3-223ENST00000616010 TRIM41Q8WV44 630 aa39.52■■■■□ 3.92
CCND3-223ENST00000616010 WRNQ14191 1432 aaPredicted RBP eCLIP39.51■■■■□ 3.929e-6■■■■■ 50.1
CCND3-223ENST00000616010 PDS5BQ9NTI5 1447 aa39.43■■■■□ 3.9
CCND3-223ENST00000616010 SYNJ1O43426 1573 aa39.4■■■■□ 3.9
CCND3-223ENST00000616010 KIF21AQ7Z4S6 1674 aa39.36■■■■□ 3.89
CCND3-223ENST00000616010 CEP164Q9UPV0 1460 aa39.35■■■■□ 3.89
CCND3-223ENST00000616010 CUX1P39880 1505 aa39.28■■■■□ 3.88
CCND3-223ENST00000616010 TOP2BQ02880 1626 aa39.27■■■■□ 3.88
CCND3-223ENST00000616010 BIVM-ERCC5R4GMW8 1640 aa39.25■■■■□ 3.87
CCND3-223ENST00000616010 DNMBPQ6XZF7 1577 aa39.1■■■■□ 3.85
CCND3-223ENST00000616010 ERCC6Q03468 1493 aa39.08■■■■□ 3.85
CCND3-223ENST00000616010 URB2Q14146 1524 aaKnown RBP39.07■■■■□ 3.84
CCND3-223ENST00000616010 TOPBP1Q92547 1522 aa39.04■■■■□ 3.84
CCND3-223ENST00000616010 MRC2Q9UBG0 1479 aa38.99■■■■□ 3.83
CCND3-223ENST00000616010 FGD5Q6ZNL6 1462 aa38.94■■■■□ 3.82
CCND3-223ENST00000616010 THOC2Q8NI27 1593 aaKnown RBP38.84■■■■□ 3.81
CCND3-223ENST00000616010 SOGA1O94964 1423 aa38.83■■■■□ 3.81
CCND3-223ENST00000616010 POLA1P09884 1462 aaPredicted RBP38.82■■■■□ 3.81
CCND3-223ENST00000616010 WDR62O43379 1518 aa38.82■■■■□ 3.8
CCND3-223ENST00000616010 FAM9AQ8IZU1 332 aaPredicted RBP38.79■■■■□ 3.8
CCND3-223ENST00000616010 RUSC2Q8N2Y8 1516 aa38.71■■■■□ 3.79
CCND3-223ENST00000616010 RAD54L2Q9Y4B4 1467 aa38.67■■■■□ 3.78
CCND3-223ENST00000616010 EEA1Q15075 1411 aa38.65■■■■□ 3.78
CCND3-223ENST00000616010 CUX2O14529 1486 aa38.57■■■■□ 3.77
CCND3-223ENST00000616010 ABCA10Q8WWZ4 1543 aa38.56■■■■□ 3.76
CCND3-223ENST00000616010 WDR97A6NE52 1622 aa38.55■■■■□ 3.76
CCND3-223ENST00000616010 KIF27Q86VH2 1401 aa38.54■■■■□ 3.76
CCND3-223ENST00000616010 TARBP1Q13395 1621 aaKnown RBP38.52■■■■□ 3.76
CCND3-223ENST00000616010 CSRNP3Q8WYN3 585 aa38.43■■■■□ 3.74
CCND3-223ENST00000616010 IFT140Q96RY7 1462 aa38.41■■■■□ 3.74
CCND3-223ENST00000616010 LOC105371045A0A1W2PR82 267 aa38.34■■■■□ 3.73
CCND3-223ENST00000616010 ABCA5Q8WWZ7 1642 aa38.34■■■■□ 3.73
CCND3-223ENST00000616010 TDRD9Q8NDG6 1382 aaKnown RBP38.32■■■■□ 3.72
CCND3-223ENST00000616010 EHMT2Q96KQ7 1210 aa38.28■■■■□ 3.72
CCND3-223ENST00000616010 GAPVD1Q14C86 1478 aa38.24■■■■□ 3.71
CCND3-223ENST00000616010 ZNF608Q9ULD9 1512 aaPredicted RBP38.23■■■■□ 3.71
CCND3-223ENST00000616010 KIF21BO75037 1637 aa38.23■■■■□ 3.71
CCND3-223ENST00000616010 IGF1RP08069 1367 aa38.21■■■■□ 3.71
CCND3-223ENST00000616010 AQRO60306 1485 aaKnown RBP eCLIP38.17■■■■□ 3.74e-7■■■■■ 38.3
CCND3-223ENST00000616010 PRXQ9BXM0 1461 aa38.15■■■■□ 3.7
CCND3-223ENST00000616010 EIF4G3O43432 1585 aaKnown RBP38.15■■■■□ 3.7
CCND3-223ENST00000616010 PBRM1Q86U86 1689 aa38.14■■■■□ 3.7
CCND3-223ENST00000616010 GOLGA3Q08378 1498 aa38.13■■■■□ 3.69
CCND3-223ENST00000616010 ERICH3Q5RHP9 1530 aa38.12■■■■□ 3.69
CCND3-223ENST00000616010 RAPGEF2Q9Y4G8 1499 aa38.08■■■■□ 3.69
CCND3-223ENST00000616010 CUL7Q14999 1698 aa38.06■■■■□ 3.68
CCND3-223ENST00000616010 CARMIL1Q5VZK9 1371 aa38.03■■■■□ 3.68
CCND3-223ENST00000616010 GRIN2BQ13224 1484 aa38.02■■■■□ 3.68
CCND3-223ENST00000616010 UBTFP17480 764 aaKnown RBP37.92■■■■□ 3.66
CCND3-223ENST00000616010 ADAMTS12P58397 1594 aa37.89■■■■□ 3.66
CCND3-223ENST00000616010 SNAPC4Q5SXM2 1469 aa37.85■■■■□ 3.65
CCND3-223ENST00000616010 TNIKQ9UKE5 1360 aa37.85■■■■□ 3.65
CCND3-223ENST00000616010 FHAD1B1AJZ9 1412 aa37.81■■■■□ 3.64
CCND3-223ENST00000616010 MAGI1Q96QZ7 1491 aaPredicted RBP37.78■■■■□ 3.64
CCND3-223ENST00000616010 CEP162Q5TB80 1403 aa37.66■■■■□ 3.62
CCND3-223ENST00000616010 SYNJ2O15056 1496 aa37.63■■■■□ 3.61
CCND3-223ENST00000616010 CTTNBP2Q8WZ74 1663 aa37.59■■■■□ 3.61
CCND3-223ENST00000616010 GRIN2AQ12879 1464 aa37.57■■■■□ 3.6
CCND3-223ENST00000616010 CHMP7Q8WUX9 453 aaPredicted RBP37.51■■■■□ 3.6
CCND3-223ENST00000616010 RANGAP1P46060 587 aaPredicted RBP37.48■■■■□ 3.59
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms