RNA–Protein interactions for RNA: ENST00000248089.7

HCFC1R1-201, Transcript of host cell factor C1 regulator 1, humanhuman

TSL 1 (best) BASIC

Gene HCFC1R1, Length 965 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1R1-201ENST00000248089 NISCHQ9Y2I1 1504 aa52.01■■■■■ 5.92
HCFC1R1-201ENST00000248089 CCDC180Q9P1Z9 1646 aa46.5■■■■■ 5.03
HCFC1R1-201ENST00000248089 ABCC9O60706 1549 aa45.84■■■■■ 4.93
HCFC1R1-201ENST00000248089 RB1CC1Q8TDY2 1594 aa43.92■■■■■ 4.62
HCFC1R1-201ENST00000248089 NACADO15069 1562 aa43.73■■■■■ 4.59
HCFC1R1-201ENST00000248089 DCAF8L2P0C7V8 631 aa43.64■■■■■ 4.58
HCFC1R1-201ENST00000248089 MYO15BQ96JP2 1530 aa43.27■■■■■ 4.52
HCFC1R1-201ENST00000248089 ZCCHC6Q5VYS8 1495 aaKnown RBP43.26■■■■■ 4.52
HCFC1R1-201ENST00000248089 UNC13AQ9UPW8 1703 aa43.04■■■■■ 4.48
HCFC1R1-201ENST00000248089 DCAF1Q9Y4B6 1507 aa42.97■■■■■ 4.47
HCFC1R1-201ENST00000248089 PABPN1Q86U42 306 aaKnown RBP eCLIP42.72■■■■■ 4.43
HCFC1R1-201ENST00000248089 BICRAQ9NZM4 1560 aa42.58■■■■■ 4.41
HCFC1R1-201ENST00000248089 SCRIBQ14160 1630 aa42.44■■■■■ 4.38
HCFC1R1-201ENST00000248089 DNAJC5BQ9UF47 199 aa42.31■■■■■ 4.36
HCFC1R1-201ENST00000248089 SHROOM4Q9ULL8 1493 aa42.04■■■■■ 4.32
HCFC1R1-201ENST00000248089 EIF4G1Q04637 1599 aaKnown RBP41.51■■■■■ 4.24
HCFC1R1-201ENST00000248089 CC2D2AQ9P2K1 1620 aa41.47■■■■■ 4.23
HCFC1R1-201ENST00000248089 CECR2Q9BXF3 1484 aa41.2■■■■■ 4.19
HCFC1R1-201ENST00000248089 SMARCA4P51532 1647 aa40.51■■■■■ 4.08
HCFC1R1-201ENST00000248089 BAZ1AQ9NRL2 1556 aaPredicted RBP40.36■■■■■ 4.05
HCFC1R1-201ENST00000248089 ATAD2BQ9ULI0 1458 aa40.31■■■■■ 4.04
HCFC1R1-201ENST00000248089 NCAPD3P42695 1498 aa40.29■■■■■ 4.04
HCFC1R1-201ENST00000248089 SMARCA2P51531 1590 aa40.27■■■■■ 4.04
HCFC1R1-201ENST00000248089 HMGXB3Q12766 1538 aa40.14■■■■■ 4.02
HCFC1R1-201ENST00000248089 MROH2BQ7Z745 1585 aa40.1■■■■■ 4.01
HCFC1R1-201ENST00000248089 PEG3Q9GZU2 1588 aa40.05■■■■■ 4
HCFC1R1-201ENST00000248089 BAZ1BQ9UIG0 1483 aaKnown RBP40■■■■□ 3.99
HCFC1R1-201ENST00000248089 WIZO95785 1651 aa39.73■■■■□ 3.95
HCFC1R1-201ENST00000248089 ERCC6Q03468 1493 aa39.56■■■■□ 3.92
HCFC1R1-201ENST00000248089 NESP48681 1621 aa39.55■■■■□ 3.92
HCFC1R1-201ENST00000248089 RSF1Q96T23 1441 aaPredicted RBP39.46■■■■□ 3.91
HCFC1R1-201ENST00000248089 LAMC3Q9Y6N6 1575 aa39.38■■■■□ 3.9
HCFC1R1-201ENST00000248089 TOP2AP11388 1531 aaKnown RBP39.24■■■■□ 3.87
HCFC1R1-201ENST00000248089 CUX2O14529 1486 aa39.21■■■■□ 3.87
HCFC1R1-201ENST00000248089 KIF21AQ7Z4S6 1674 aa39.17■■■■□ 3.86
HCFC1R1-201ENST00000248089 CADPSQ9ULU8 1353 aa39.11■■■■□ 3.85
HCFC1R1-201ENST00000248089 THOC2Q8NI27 1593 aaKnown RBP39.08■■■■□ 3.85
HCFC1R1-201ENST00000248089 PDS5BQ9NTI5 1447 aa39.07■■■■□ 3.85
HCFC1R1-201ENST00000248089 CFTRP13569 1480 aa38.81■■■■□ 3.8
HCFC1R1-201ENST00000248089 MRC2Q9UBG0 1479 aa38.75■■■■□ 3.79
HCFC1R1-201ENST00000248089 CEP164Q9UPV0 1460 aa38.74■■■■□ 3.79
HCFC1R1-201ENST00000248089 CCDC88BA6NC98 1476 aa38.73■■■■□ 3.79
HCFC1R1-201ENST00000248089 FANCD2Q9BXW9 1451 aa38.73■■■■□ 3.79
HCFC1R1-201ENST00000248089 PRDM2Q13029 1718 aa38.69■■■■□ 3.78
HCFC1R1-201ENST00000248089 WDR62O43379 1518 aa38.64■■■■□ 3.78
HCFC1R1-201ENST00000248089 URB2Q14146 1524 aaKnown RBP38.38■■■■□ 3.73
HCFC1R1-201ENST00000248089 DNAJC5Q9H3Z4 198 aa38.37■■■■□ 3.73
HCFC1R1-201ENST00000248089 SUPT5HO00267 1087 aaKnown RBP38.23■■■■□ 3.71
HCFC1R1-201ENST00000248089 TOPBP1Q92547 1522 aa38.08■■■■□ 3.69
HCFC1R1-201ENST00000248089 DNMBPQ6XZF7 1577 aa38.02■■■■□ 3.68
HCFC1R1-201ENST00000248089 ABCC8Q09428 1581 aa38■■■■□ 3.67
HCFC1R1-201ENST00000248089 IFT140Q96RY7 1462 aa37.9■■■■□ 3.66
HCFC1R1-201ENST00000248089 ZNF608Q9ULD9 1512 aaPredicted RBP37.8■■■■□ 3.64
HCFC1R1-201ENST00000248089 POLA1P09884 1462 aaPredicted RBP37.72■■■■□ 3.63
HCFC1R1-201ENST00000248089 TARBP1Q13395 1621 aaKnown RBP37.71■■■■□ 3.63
HCFC1R1-201ENST00000248089 EIF4G3O43432 1585 aaKnown RBP37.71■■■■□ 3.63
HCFC1R1-201ENST00000248089 CUX1P39880 1505 aa37.66■■■■□ 3.62
HCFC1R1-201ENST00000248089 FGD5Q6ZNL6 1462 aa37.6■■■■□ 3.61
HCFC1R1-201ENST00000248089 RAD54L2Q9Y4B4 1467 aa37.58■■■■□ 3.61
HCFC1R1-201ENST00000248089 SOGA1O94964 1423 aa37.53■■■■□ 3.6
HCFC1R1-201ENST00000248089 AQRO60306 1485 aaKnown RBP eCLIP37.52■■■■□ 3.62e-10■■■■■ 40.6
HCFC1R1-201ENST00000248089 OSCARQ8IYS5 282 aa37.45■■■■□ 3.59
HCFC1R1-201ENST00000248089 TDRD9Q8NDG6 1382 aaKnown RBP37.38■■■■□ 3.57
HCFC1R1-201ENST00000248089 WDR97A6NE52 1622 aa37.37■■■■□ 3.57
HCFC1R1-201ENST00000248089 CHD1O14646 1710 aa37.35■■■■□ 3.57
HCFC1R1-201ENST00000248089 BIVM-ERCC5R4GMW8 1640 aa37.28■■■■□ 3.56
HCFC1R1-201ENST00000248089 SYNJ1O43426 1573 aa37.25■■■■□ 3.55
HCFC1R1-201ENST00000248089 WRNQ14191 1432 aaPredicted RBP eCLIP37.24■■■■□ 3.55
HCFC1R1-201ENST00000248089 TOP2BQ02880 1626 aa37.24■■■■□ 3.55
HCFC1R1-201ENST00000248089 SNAPC4Q5SXM2 1469 aa37.2■■■■□ 3.55
HCFC1R1-201ENST00000248089 PBRM1Q86U86 1689 aa37.2■■■■□ 3.55
HCFC1R1-201ENST00000248089 ABCA10Q8WWZ4 1543 aa37.17■■■■□ 3.54
HCFC1R1-201ENST00000248089 FBLN2P98095 1184 aa37.17■■■■□ 3.54
HCFC1R1-201ENST00000248089 GRIN2BQ13224 1484 aa37.15■■■■□ 3.54
HCFC1R1-201ENST00000248089 ABCA5Q8WWZ7 1642 aa37.13■■■■□ 3.53
HCFC1R1-201ENST00000248089 GAPVD1Q14C86 1478 aa37.11■■■■□ 3.53
HCFC1R1-201ENST00000248089 MAGI1Q96QZ7 1491 aaPredicted RBP37.09■■■■□ 3.53
HCFC1R1-201ENST00000248089 TRIM41Q8WV44 630 aa37.09■■■■□ 3.53
HCFC1R1-201ENST00000248089 RIMBP3CA6NJZ7 1639 aa37.04■■■■□ 3.52
HCFC1R1-201ENST00000248089 RIMBP3BA6NNM3 1639 aa37.04■■■■□ 3.52
HCFC1R1-201ENST00000248089 RIMBP3Q9UFD9 1639 aa37.04■■■■□ 3.52
HCFC1R1-201ENST00000248089 SYNJ2O15056 1496 aa36.96■■■■□ 3.51
HCFC1R1-201ENST00000248089 ARHGEF11O15085 1522 aa36.95■■■■□ 3.51
HCFC1R1-201ENST00000248089 CHMP7Q8WUX9 453 aaPredicted RBP36.95■■■■□ 3.51
HCFC1R1-201ENST00000248089 CLASP1Q7Z460 1538 aa36.83■■■■□ 3.49
HCFC1R1-201ENST00000248089 ADAMTS12P58397 1594 aa36.82■■■■□ 3.48
HCFC1R1-201ENST00000248089 ERICH3Q5RHP9 1530 aa36.74■■■■□ 3.47
HCFC1R1-201ENST00000248089 GRIN2AQ12879 1464 aa36.69■■■■□ 3.46
HCFC1R1-201ENST00000248089 FHAD1B1AJZ9 1412 aa36.65■■■■□ 3.46
HCFC1R1-201ENST00000248089 ARAP1Q96P48 1450 aa36.62■■■■□ 3.45
HCFC1R1-201ENST00000248089 CYB5RLQ6IPT4 315 aa36.58■■■■□ 3.45
HCFC1R1-201ENST00000248089 CEP170Q5SW79 1584 aa36.57■■■■□ 3.45
HCFC1R1-201ENST00000248089 NUP160Q12769 1436 aa36.51■■■■□ 3.43
HCFC1R1-201ENST00000248089 KIF27Q86VH2 1401 aa36.49■■■■□ 3.43
HCFC1R1-201ENST00000248089 CUL7Q14999 1698 aa36.39■■■■□ 3.42
HCFC1R1-201ENST00000248089 SHROOM2Q13796 1616 aa36.34■■■■□ 3.41
HCFC1R1-201ENST00000248089 IGF1RP08069 1367 aa36.33■■■■□ 3.41
HCFC1R1-201ENST00000248089 ERCC6L2Q5T890 1561 aa36.32■■■■□ 3.41
HCFC1R1-201ENST00000248089 RUSC2Q8N2Y8 1516 aa36.29■■■■□ 3.4
HCFC1R1-201ENST00000248089 CARMIL1Q5VZK9 1371 aa36.14■■■■□ 3.38
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms