RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 NISCHQ9Y2I1 1504 aa52.67■■■■■ 6.02
CLN3-207ENST00000395653 CCDC180Q9P1Z9 1646 aa46.82■■■■■ 5.09
CLN3-207ENST00000395653 ABCC9O60706 1549 aa45.65■■■■■ 4.9
CLN3-207ENST00000395653 RB1CC1Q8TDY2 1594 aa44■■■■■ 4.63
CLN3-207ENST00000395653 NACADO15069 1562 aa43.99■■■■■ 4.63
CLN3-207ENST00000395653 ZCCHC6Q5VYS8 1495 aaKnown RBP43.91■■■■■ 4.62
CLN3-207ENST00000395653 DCAF8L2P0C7V8 631 aa43.87■■■■■ 4.61
CLN3-207ENST00000395653 MYO15BQ96JP2 1530 aa43.79■■■■■ 4.6
CLN3-207ENST00000395653 DCAF1Q9Y4B6 1507 aa43.63■■■■■ 4.57
CLN3-207ENST00000395653 UNC13AQ9UPW8 1703 aa42.97■■■■■ 4.47
CLN3-207ENST00000395653 SCRIBQ14160 1630 aa42.66■■■■■ 4.42
CLN3-207ENST00000395653 BICRAQ9NZM4 1560 aa42.65■■■■■ 4.42
CLN3-207ENST00000395653 PABPN1Q86U42 306 aaKnown RBP eCLIP42.63■■■■■ 4.42
CLN3-207ENST00000395653 SHROOM4Q9ULL8 1493 aa42.29■■■■■ 4.36
CLN3-207ENST00000395653 DNAJC5BQ9UF47 199 aa41.78■■■■■ 4.28
CLN3-207ENST00000395653 EIF4G1Q04637 1599 aaKnown RBP41.53■■■■■ 4.24
CLN3-207ENST00000395653 CC2D2AQ9P2K1 1620 aa41.32■■■■■ 4.21
CLN3-207ENST00000395653 CECR2Q9BXF3 1484 aa41.03■■■■■ 4.16
CLN3-207ENST00000395653 SMARCA4P51532 1647 aa40.85■■■■■ 4.13
CLN3-207ENST00000395653 BAZ1AQ9NRL2 1556 aaPredicted RBP40.83■■■■■ 4.13
CLN3-207ENST00000395653 ATAD2BQ9ULI0 1458 aa40.6■■■■■ 4.09
CLN3-207ENST00000395653 NCAPD3P42695 1498 aa40.58■■■■■ 4.09
CLN3-207ENST00000395653 SMARCA2P51531 1590 aa40.58■■■■■ 4.09
CLN3-207ENST00000395653 MROH2BQ7Z745 1585 aa40.58■■■■■ 4.09
CLN3-207ENST00000395653 PEG3Q9GZU2 1588 aa40.49■■■■■ 4.07
CLN3-207ENST00000395653 HMGXB3Q12766 1538 aa40.41■■■■■ 4.06
CLN3-207ENST00000395653 BAZ1BQ9UIG0 1483 aaKnown RBP40.27■■■■■ 4.04
CLN3-207ENST00000395653 RSF1Q96T23 1441 aaPredicted RBP40.15■■■■■ 4.02
CLN3-207ENST00000395653 WIZO95785 1651 aa40.13■■■■■ 4.01
CLN3-207ENST00000395653 TOP2AP11388 1531 aaKnown RBP39.75■■■■□ 3.95
CLN3-207ENST00000395653 NESP48681 1621 aa39.52■■■■□ 3.92
CLN3-207ENST00000395653 LAMC3Q9Y6N6 1575 aa39.5■■■■□ 3.91
CLN3-207ENST00000395653 CADPSQ9ULU8 1353 aa39.39■■■■□ 3.9
CLN3-207ENST00000395653 ERCC6Q03468 1493 aa39.36■■■■□ 3.89
CLN3-207ENST00000395653 CCDC88BA6NC98 1476 aa39.25■■■■□ 3.87
CLN3-207ENST00000395653 PDS5BQ9NTI5 1447 aa39.22■■■■□ 3.87
CLN3-207ENST00000395653 CFTRP13569 1480 aa39.19■■■■□ 3.86
CLN3-207ENST00000395653 SUPT5HO00267 1087 aaKnown RBP39.14■■■■□ 3.86
CLN3-207ENST00000395653 KIF21AQ7Z4S6 1674 aa39.08■■■■□ 3.85
CLN3-207ENST00000395653 THOC2Q8NI27 1593 aaKnown RBP38.96■■■■□ 3.83
CLN3-207ENST00000395653 CUX2O14529 1486 aa38.95■■■■□ 3.83
CLN3-207ENST00000395653 FANCD2Q9BXW9 1451 aa38.93■■■■□ 3.82
CLN3-207ENST00000395653 PRDM2Q13029 1718 aa38.89■■■■□ 3.82
CLN3-207ENST00000395653 CEP164Q9UPV0 1460 aa38.88■■■■□ 3.81
CLN3-207ENST00000395653 MRC2Q9UBG0 1479 aa38.81■■■■□ 3.8
CLN3-207ENST00000395653 WDR62O43379 1518 aa38.7■■■■□ 3.79
CLN3-207ENST00000395653 URB2Q14146 1524 aaKnown RBP38.53■■■■□ 3.76
CLN3-207ENST00000395653 ABCC8Q09428 1581 aa38.35■■■■□ 3.73
CLN3-207ENST00000395653 TOPBP1Q92547 1522 aa38.32■■■■□ 3.73
CLN3-207ENST00000395653 DNMBPQ6XZF7 1577 aa38.3■■■■□ 3.72
CLN3-207ENST00000395653 IFT140Q96RY7 1462 aa38.08■■■■□ 3.69
CLN3-207ENST00000395653 CUX1P39880 1505 aa38.06■■■■□ 3.68
CLN3-207ENST00000395653 POLA1P09884 1462 aaPredicted RBP38.01■■■■□ 3.68
CLN3-207ENST00000395653 FGD5Q6ZNL6 1462 aa37.92■■■■□ 3.66
CLN3-207ENST00000395653 TARBP1Q13395 1621 aaKnown RBP37.91■■■■□ 3.66
CLN3-207ENST00000395653 WRNQ14191 1432 aaPredicted RBP eCLIP37.87■■■■□ 3.65
CLN3-207ENST00000395653 ZNF608Q9ULD9 1512 aaPredicted RBP37.86■■■■□ 3.65
CLN3-207ENST00000395653 SOGA1O94964 1423 aa37.83■■■■□ 3.65
CLN3-207ENST00000395653 RAD54L2Q9Y4B4 1467 aa37.81■■■■□ 3.64
CLN3-207ENST00000395653 BIVM-ERCC5R4GMW8 1640 aa37.78■■■■□ 3.64
CLN3-207ENST00000395653 TOP2BQ02880 1626 aa37.78■■■■□ 3.64
CLN3-207ENST00000395653 SYNJ1O43426 1573 aa37.75■■■■□ 3.63
CLN3-207ENST00000395653 EIF4G3O43432 1585 aaKnown RBP37.74■■■■□ 3.63
CLN3-207ENST00000395653 WDR97A6NE52 1622 aa37.66■■■■□ 3.62
CLN3-207ENST00000395653 AQRO60306 1485 aaKnown RBP eCLIP37.65■■■■□ 3.626e-6■■■■□ 25.1
CLN3-207ENST00000395653 TDRD9Q8NDG6 1382 aaKnown RBP37.6■■■■□ 3.61
CLN3-207ENST00000395653 DNAJC5Q9H3Z4 198 aa37.6■■■■□ 3.61
CLN3-207ENST00000395653 ABCA10Q8WWZ4 1543 aa37.58■■■■□ 3.61
CLN3-207ENST00000395653 ABCA5Q8WWZ7 1642 aa37.42■■■■□ 3.58
CLN3-207ENST00000395653 GRIN2BQ13224 1484 aa37.41■■■■□ 3.58
CLN3-207ENST00000395653 GAPVD1Q14C86 1478 aa37.41■■■■□ 3.58
CLN3-207ENST00000395653 SNAPC4Q5SXM2 1469 aa37.33■■■■□ 3.57
CLN3-207ENST00000395653 PBRM1Q86U86 1689 aa37.32■■■■□ 3.57
CLN3-207ENST00000395653 MAGI1Q96QZ7 1491 aaPredicted RBP37.31■■■■□ 3.56
CLN3-207ENST00000395653 OSCARQ8IYS5 282 aa37.3■■■■□ 3.56
CLN3-207ENST00000395653 CHD1O14646 1710 aa37.22■■■■□ 3.55
CLN3-207ENST00000395653 SYNJ2O15056 1496 aa37.15■■■■□ 3.54
CLN3-207ENST00000395653 FBLN2P98095 1184 aa37.15■■■■□ 3.54
CLN3-207ENST00000395653 ERICH3Q5RHP9 1530 aa37.14■■■■□ 3.54
CLN3-207ENST00000395653 CHMP7Q8WUX9 453 aaPredicted RBP37.1■■■■□ 3.53
CLN3-207ENST00000395653 KIF27Q86VH2 1401 aa37.07■■■■□ 3.53
CLN3-207ENST00000395653 ADAMTS12P58397 1594 aa37.06■■■■□ 3.52
CLN3-207ENST00000395653 FHAD1B1AJZ9 1412 aa36.99■■■■□ 3.51
CLN3-207ENST00000395653 TRIM41Q8WV44 630 aa36.99■■■■□ 3.51
CLN3-207ENST00000395653 GRIN2AQ12879 1464 aa36.92■■■■□ 3.5
CLN3-207ENST00000395653 IGF1RP08069 1367 aa36.89■■■■□ 3.5
CLN3-207ENST00000395653 CLASP1Q7Z460 1538 aa36.86■■■■□ 3.49
CLN3-207ENST00000395653 CUL7Q14999 1698 aa36.81■■■■□ 3.48
CLN3-207ENST00000395653 NUP160Q12769 1436 aa36.77■■■■□ 3.48
CLN3-207ENST00000395653 CEP170Q5SW79 1584 aa36.73■■■■□ 3.47
CLN3-207ENST00000395653 ARHGEF11O15085 1522 aa36.73■■■■□ 3.47
CLN3-207ENST00000395653 RUSC2Q8N2Y8 1516 aa36.71■■■■□ 3.47
CLN3-207ENST00000395653 RIMBP3CA6NJZ7 1639 aa36.7■■■■□ 3.47
CLN3-207ENST00000395653 RIMBP3BA6NNM3 1639 aa36.7■■■■□ 3.47
CLN3-207ENST00000395653 RIMBP3Q9UFD9 1639 aa36.7■■■■□ 3.47
CLN3-207ENST00000395653 CARMIL1Q5VZK9 1371 aa36.67■■■■□ 3.46
CLN3-207ENST00000395653 CHIC1Q5VXU3 224 aa36.6■■■■□ 3.45
CLN3-207ENST00000395653 SHROOM2Q13796 1616 aa36.48■■■■□ 3.43
CLN3-207ENST00000395653 RAPGEF2Q9Y4G8 1499 aa36.47■■■■□ 3.43
CLN3-207ENST00000395653 EEA1Q15075 1411 aa36.43■■■■□ 3.42
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms