RNA–Protein interactions for RNA: ENST00000373463.7

TMEM54-202, Transcript of transmembrane protein 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEM54, Length 999 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM54-202ENST00000373463 NISCHQ9Y2I1 1504 aa52.14■■■■■ 5.94
TMEM54-202ENST00000373463 CCDC180Q9P1Z9 1646 aa46.39■■■■■ 5.02
TMEM54-202ENST00000373463 ABCC9O60706 1549 aa45.49■■■■■ 4.87
TMEM54-202ENST00000373463 RB1CC1Q8TDY2 1594 aa43.66■■■■■ 4.58
TMEM54-202ENST00000373463 NACADO15069 1562 aa43.6■■■■■ 4.57
TMEM54-202ENST00000373463 DCAF8L2P0C7V8 631 aa43.45■■■■■ 4.55
TMEM54-202ENST00000373463 ZCCHC6Q5VYS8 1495 aaKnown RBP43.43■■■■■ 4.54
TMEM54-202ENST00000373463 MYO15BQ96JP2 1530 aa43.32■■■■■ 4.52
TMEM54-202ENST00000373463 DCAF1Q9Y4B6 1507 aa43.11■■■■■ 4.49
TMEM54-202ENST00000373463 UNC13AQ9UPW8 1703 aa42.83■■■■■ 4.45
TMEM54-202ENST00000373463 BICRAQ9NZM4 1560 aa42.49■■■■■ 4.39
TMEM54-202ENST00000373463 PABPN1Q86U42 306 aaKnown RBP eCLIP42.47■■■■■ 4.39
TMEM54-202ENST00000373463 SCRIBQ14160 1630 aa42.34■■■■■ 4.37
TMEM54-202ENST00000373463 DNAJC5BQ9UF47 199 aa41.93■■■■■ 4.3
TMEM54-202ENST00000373463 SHROOM4Q9ULL8 1493 aa41.87■■■■■ 4.29
TMEM54-202ENST00000373463 EIF4G1Q04637 1599 aaKnown RBP41.29■■■■■ 4.2
TMEM54-202ENST00000373463 CC2D2AQ9P2K1 1620 aa41.16■■■■■ 4.18
TMEM54-202ENST00000373463 CECR2Q9BXF3 1484 aa40.85■■■■■ 4.13
TMEM54-202ENST00000373463 SMARCA4P51532 1647 aa40.49■■■■■ 4.07
TMEM54-202ENST00000373463 BAZ1AQ9NRL2 1556 aaPredicted RBP40.37■■■■■ 4.05
TMEM54-202ENST00000373463 ATAD2BQ9ULI0 1458 aa40.28■■■■■ 4.04
TMEM54-202ENST00000373463 NCAPD3P42695 1498 aa40.26■■■■■ 4.03
TMEM54-202ENST00000373463 MROH2BQ7Z745 1585 aa40.23■■■■■ 4.03
TMEM54-202ENST00000373463 SMARCA2P51531 1590 aa40.17■■■■■ 4.02
TMEM54-202ENST00000373463 PEG3Q9GZU2 1588 aa40.1■■■■■ 4.01
TMEM54-202ENST00000373463 HMGXB3Q12766 1538 aa40.06■■■■■ 4
TMEM54-202ENST00000373463 BAZ1BQ9UIG0 1483 aaKnown RBP39.89■■■■□ 3.98
TMEM54-202ENST00000373463 WIZO95785 1651 aa39.79■■■■□ 3.96
TMEM54-202ENST00000373463 RSF1Q96T23 1441 aaPredicted RBP39.69■■■■□ 3.94
TMEM54-202ENST00000373463 NESP48681 1621 aa39.39■■■■□ 3.9
TMEM54-202ENST00000373463 TOP2AP11388 1531 aaKnown RBP39.3■■■■□ 3.88
TMEM54-202ENST00000373463 LAMC3Q9Y6N6 1575 aa39.19■■■■□ 3.86
TMEM54-202ENST00000373463 ERCC6Q03468 1493 aa39.11■■■■□ 3.85
TMEM54-202ENST00000373463 CADPSQ9ULU8 1353 aa39.05■■■■□ 3.84
TMEM54-202ENST00000373463 KIF21AQ7Z4S6 1674 aa38.92■■■■□ 3.82
TMEM54-202ENST00000373463 PDS5BQ9NTI5 1447 aa38.86■■■■□ 3.81
TMEM54-202ENST00000373463 CCDC88BA6NC98 1476 aa38.86■■■■□ 3.81
TMEM54-202ENST00000373463 CFTRP13569 1480 aa38.83■■■■□ 3.81
TMEM54-202ENST00000373463 THOC2Q8NI27 1593 aaKnown RBP38.82■■■■□ 3.8
TMEM54-202ENST00000373463 CUX2O14529 1486 aa38.78■■■■□ 3.8
TMEM54-202ENST00000373463 FANCD2Q9BXW9 1451 aa38.61■■■■□ 3.77
TMEM54-202ENST00000373463 PRDM2Q13029 1718 aa38.56■■■■□ 3.76
TMEM54-202ENST00000373463 CEP164Q9UPV0 1460 aa38.55■■■■□ 3.76
TMEM54-202ENST00000373463 MRC2Q9UBG0 1479 aa38.54■■■■□ 3.76
TMEM54-202ENST00000373463 SUPT5HO00267 1087 aaKnown RBP38.51■■■■□ 3.76
TMEM54-202ENST00000373463 WDR62O43379 1518 aa38.46■■■■□ 3.75
TMEM54-202ENST00000373463 URB2Q14146 1524 aaKnown RBP38.31■■■■□ 3.72
TMEM54-202ENST00000373463 TOPBP1Q92547 1522 aa38.02■■■■□ 3.68
TMEM54-202ENST00000373463 DNMBPQ6XZF7 1577 aa37.95■■■■□ 3.67
TMEM54-202ENST00000373463 ABCC8Q09428 1581 aa37.9■■■■□ 3.66
TMEM54-202ENST00000373463 IFT140Q96RY7 1462 aa37.74■■■■□ 3.63
TMEM54-202ENST00000373463 CUX1P39880 1505 aa37.73■■■■□ 3.63
TMEM54-202ENST00000373463 DNAJC5Q9H3Z4 198 aa37.73■■■■□ 3.63
TMEM54-202ENST00000373463 POLA1P09884 1462 aaPredicted RBP37.7■■■■□ 3.63
TMEM54-202ENST00000373463 ZNF608Q9ULD9 1512 aaPredicted RBP37.67■■■■□ 3.62
TMEM54-202ENST00000373463 TARBP1Q13395 1621 aaKnown RBP37.65■■■■□ 3.62
TMEM54-202ENST00000373463 FGD5Q6ZNL6 1462 aa37.58■■■■□ 3.61
TMEM54-202ENST00000373463 RAD54L2Q9Y4B4 1467 aa37.55■■■■□ 3.6
TMEM54-202ENST00000373463 EIF4G3O43432 1585 aaKnown RBP37.51■■■■□ 3.59
TMEM54-202ENST00000373463 SOGA1O94964 1423 aa37.48■■■■□ 3.59
TMEM54-202ENST00000373463 AQRO60306 1485 aaKnown RBP eCLIP37.41■■■■□ 3.585e-7■■■■■ 29.5
TMEM54-202ENST00000373463 SYNJ1O43426 1573 aa37.38■■■■□ 3.57
TMEM54-202ENST00000373463 WRNQ14191 1432 aaPredicted RBP eCLIP37.37■■■■□ 3.57
TMEM54-202ENST00000373463 BIVM-ERCC5R4GMW8 1640 aa37.36■■■■□ 3.57
TMEM54-202ENST00000373463 WDR97A6NE52 1622 aa37.35■■■■□ 3.57
TMEM54-202ENST00000373463 TOP2BQ02880 1626 aa37.34■■■■□ 3.57
TMEM54-202ENST00000373463 TDRD9Q8NDG6 1382 aaKnown RBP37.31■■■■□ 3.56
TMEM54-202ENST00000373463 ABCA10Q8WWZ4 1543 aa37.2■■■■□ 3.55
TMEM54-202ENST00000373463 ABCA5Q8WWZ7 1642 aa37.11■■■■□ 3.53
TMEM54-202ENST00000373463 OSCARQ8IYS5 282 aa37.1■■■■□ 3.53
TMEM54-202ENST00000373463 CHD1O14646 1710 aa37.07■■■■□ 3.53
TMEM54-202ENST00000373463 SNAPC4Q5SXM2 1469 aa37.06■■■■□ 3.52
TMEM54-202ENST00000373463 GRIN2BQ13224 1484 aa37.05■■■■□ 3.52
TMEM54-202ENST00000373463 GAPVD1Q14C86 1478 aa37.05■■■■□ 3.52
TMEM54-202ENST00000373463 PBRM1Q86U86 1689 aa37.05■■■■□ 3.52
TMEM54-202ENST00000373463 MAGI1Q96QZ7 1491 aaPredicted RBP36.97■■■■□ 3.51
TMEM54-202ENST00000373463 FBLN2P98095 1184 aa36.86■■■■□ 3.49
TMEM54-202ENST00000373463 SYNJ2O15056 1496 aa36.84■■■■□ 3.49
TMEM54-202ENST00000373463 CHMP7Q8WUX9 453 aaPredicted RBP36.75■■■■□ 3.47
TMEM54-202ENST00000373463 ADAMTS12P58397 1594 aa36.74■■■■□ 3.47
TMEM54-202ENST00000373463 ERICH3Q5RHP9 1530 aa36.73■■■■□ 3.47
TMEM54-202ENST00000373463 CLASP1Q7Z460 1538 aa36.67■■■■□ 3.46
TMEM54-202ENST00000373463 RIMBP3CA6NJZ7 1639 aa36.65■■■■□ 3.46
TMEM54-202ENST00000373463 RIMBP3BA6NNM3 1639 aa36.65■■■■□ 3.46
TMEM54-202ENST00000373463 RIMBP3Q9UFD9 1639 aa36.65■■■■□ 3.46
TMEM54-202ENST00000373463 ARHGEF11O15085 1522 aa36.61■■■■□ 3.45
TMEM54-202ENST00000373463 GRIN2AQ12879 1464 aa36.61■■■■□ 3.45
TMEM54-202ENST00000373463 FHAD1B1AJZ9 1412 aa36.6■■■■□ 3.45
TMEM54-202ENST00000373463 KIF27Q86VH2 1401 aa36.56■■■■□ 3.44
TMEM54-202ENST00000373463 CEP170Q5SW79 1584 aa36.49■■■■□ 3.43
TMEM54-202ENST00000373463 IGF1RP08069 1367 aa36.49■■■■□ 3.43
TMEM54-202ENST00000373463 NUP160Q12769 1436 aa36.47■■■■□ 3.43
TMEM54-202ENST00000373463 TRIM41Q8WV44 630 aa36.4■■■■□ 3.42
TMEM54-202ENST00000373463 CUL7Q14999 1698 aa36.38■■■■□ 3.41
TMEM54-202ENST00000373463 RUSC2Q8N2Y8 1516 aa36.35■■■■□ 3.41
TMEM54-202ENST00000373463 ARAP1Q96P48 1450 aa36.34■■■■□ 3.41
TMEM54-202ENST00000373463 SHROOM2Q13796 1616 aa36.25■■■■□ 3.39
TMEM54-202ENST00000373463 CARMIL1Q5VZK9 1371 aa36.23■■■■□ 3.39
TMEM54-202ENST00000373463 ERCC6L2Q5T890 1561 aa36.21■■■■□ 3.39
TMEM54-202ENST00000373463 CYB5RLQ6IPT4 315 aa36.2■■■■□ 3.39
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms