Protein–RNA interactions for Protein: X5D2U9

HLA-DRB4, HLA class II histocompatibility antigen, DR beta 4 chain, humanhuman

Predictions only

Length 266 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DRB4X5D2U9 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
HLA-DRB4X5D2U9 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC20.74■□□□□ 0.91
HLA-DRB4X5D2U9 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC20.74■□□□□ 0.91
HLA-DRB4X5D2U9 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
HLA-DRB4X5D2U9 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
HLA-DRB4X5D2U9 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HLA-DRB4X5D2U9 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC20.71■□□□□ 0.91
HLA-DRB4X5D2U9 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC20.71■□□□□ 0.91
HLA-DRB4X5D2U9 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC20.7■□□□□ 0.9
HLA-DRB4X5D2U9 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HLA-DRB4X5D2U9 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC20.7■□□□□ 0.9
HLA-DRB4X5D2U9 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HLA-DRB4X5D2U9 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC20.69■□□□□ 0.9
HLA-DRB4X5D2U9 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
HLA-DRB4X5D2U9 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
HLA-DRB4X5D2U9 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HLA-DRB4X5D2U9 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HLA-DRB4X5D2U9 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC20.67■□□□□ 0.9
HLA-DRB4X5D2U9 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HLA-DRB4X5D2U9 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HLA-DRB4X5D2U9 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
HLA-DRB4X5D2U9 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
HLA-DRB4X5D2U9 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HLA-DRB4X5D2U9 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HLA-DRB4X5D2U9 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HLA-DRB4X5D2U9 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
HLA-DRB4X5D2U9 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HLA-DRB4X5D2U9 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC20.61■□□□□ 0.89
HLA-DRB4X5D2U9 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC20.61■□□□□ 0.89
HLA-DRB4X5D2U9 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
HLA-DRB4X5D2U9 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HLA-DRB4X5D2U9 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
HLA-DRB4X5D2U9 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC20.58■□□□□ 0.89
HLA-DRB4X5D2U9 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HLA-DRB4X5D2U9 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HLA-DRB4X5D2U9 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
HLA-DRB4X5D2U9 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HLA-DRB4X5D2U9 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC20.54■□□□□ 0.88
HLA-DRB4X5D2U9 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
HLA-DRB4X5D2U9 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC20.54■□□□□ 0.88
HLA-DRB4X5D2U9 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC20.54■□□□□ 0.88
HLA-DRB4X5D2U9 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HLA-DRB4X5D2U9 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HLA-DRB4X5D2U9 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC20.52■□□□□ 0.88
HLA-DRB4X5D2U9 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC20.52■□□□□ 0.88
HLA-DRB4X5D2U9 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
HLA-DRB4X5D2U9 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
HLA-DRB4X5D2U9 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HLA-DRB4X5D2U9 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC20.5■□□□□ 0.87
HLA-DRB4X5D2U9 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HLA-DRB4X5D2U9 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HLA-DRB4X5D2U9 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HLA-DRB4X5D2U9 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC20.49■□□□□ 0.87
HLA-DRB4X5D2U9 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC20.49■□□□□ 0.87
HLA-DRB4X5D2U9 AL161658.1-201ENST00000623641 1967 ntBASIC20.48■□□□□ 0.87
HLA-DRB4X5D2U9 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
HLA-DRB4X5D2U9 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
HLA-DRB4X5D2U9 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HLA-DRB4X5D2U9 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
HLA-DRB4X5D2U9 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC20.46■□□□□ 0.87
HLA-DRB4X5D2U9 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
HLA-DRB4X5D2U9 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HLA-DRB4X5D2U9 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC20.45■□□□□ 0.86
HLA-DRB4X5D2U9 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
HLA-DRB4X5D2U9 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HLA-DRB4X5D2U9 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HLA-DRB4X5D2U9 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HLA-DRB4X5D2U9 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC20.41■□□□□ 0.86
HLA-DRB4X5D2U9 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC20.41■□□□□ 0.86
HLA-DRB4X5D2U9 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HLA-DRB4X5D2U9 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
HLA-DRB4X5D2U9 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC20.39■□□□□ 0.86
HLA-DRB4X5D2U9 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
HLA-DRB4X5D2U9 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC20.39■□□□□ 0.85
HLA-DRB4X5D2U9 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
HLA-DRB4X5D2U9 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HLA-DRB4X5D2U9 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
HLA-DRB4X5D2U9 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC20.37■□□□□ 0.85
HLA-DRB4X5D2U9 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
HLA-DRB4X5D2U9 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HLA-DRB4X5D2U9 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
HLA-DRB4X5D2U9 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC20.36■□□□□ 0.85
HLA-DRB4X5D2U9 AC120057.4-201ENST00000624722 1615 ntBASIC20.36■□□□□ 0.85
HLA-DRB4X5D2U9 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HLA-DRB4X5D2U9 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
HLA-DRB4X5D2U9 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HLA-DRB4X5D2U9 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC20.35■□□□□ 0.85
HLA-DRB4X5D2U9 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HLA-DRB4X5D2U9 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
HLA-DRB4X5D2U9 KLF16-203ENST00000592313 508 ntTSL 3 BASIC20.35■□□□□ 0.85
HLA-DRB4X5D2U9 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
HLA-DRB4X5D2U9 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
HLA-DRB4X5D2U9 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC20.34■□□□□ 0.85
HLA-DRB4X5D2U9 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
HLA-DRB4X5D2U9 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HLA-DRB4X5D2U9 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC20.33■□□□□ 0.85
HLA-DRB4X5D2U9 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
HLA-DRB4X5D2U9 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HLA-DRB4X5D2U9 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC20.32■□□□□ 0.84
HLA-DRB4X5D2U9 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms