Protein–RNA interactions for Protein: Q96PZ7

CSMD1, CUB and sushi domain-containing protein 1, humanhuman

Predictions only

Length 3,565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1Q96PZ7 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC24.45■■□□□ 1.5
CSMD1Q96PZ7 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC24.43■■□□□ 1.5
CSMD1Q96PZ7 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CSMD1Q96PZ7 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC24.42■■□□□ 1.5
CSMD1Q96PZ7 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC24.42■■□□□ 1.5
CSMD1Q96PZ7 MIR3665-201ENST00000578708 105 ntBASIC24.42■■□□□ 1.5
CSMD1Q96PZ7 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC24.41■■□□□ 1.5
CSMD1Q96PZ7 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
CSMD1Q96PZ7 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC24.41■■□□□ 1.5
CSMD1Q96PZ7 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
CSMD1Q96PZ7 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
CSMD1Q96PZ7 DUX4L28-201ENST00000623687 678 ntBASIC24.37■■□□□ 1.49
CSMD1Q96PZ7 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC24.34■■□□□ 1.49
CSMD1Q96PZ7 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC24.33■■□□□ 1.49
CSMD1Q96PZ7 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC24.33■■□□□ 1.49
CSMD1Q96PZ7 MIR4449-201ENST00000578365 66 ntBASIC24.32■■□□□ 1.48
CSMD1Q96PZ7 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
CSMD1Q96PZ7 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC24.32■■□□□ 1.48
CSMD1Q96PZ7 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CSMD1Q96PZ7 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC24.29■■□□□ 1.48
CSMD1Q96PZ7 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC24.29■■□□□ 1.48
CSMD1Q96PZ7 AC145285.7-201ENST00000614819 1539 ntBASIC24.28■■□□□ 1.48
CSMD1Q96PZ7 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC24.27■■□□□ 1.48
CSMD1Q96PZ7 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC24.27■■□□□ 1.48
CSMD1Q96PZ7 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC24.27■■□□□ 1.48
CSMD1Q96PZ7 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC24.27■■□□□ 1.48
CSMD1Q96PZ7 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC24.26■■□□□ 1.47
CSMD1Q96PZ7 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
CSMD1Q96PZ7 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC24.25■■□□□ 1.47
CSMD1Q96PZ7 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC24.25■■□□□ 1.47
CSMD1Q96PZ7 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
CSMD1Q96PZ7 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC24.23■■□□□ 1.47
CSMD1Q96PZ7 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC24.22■■□□□ 1.47
CSMD1Q96PZ7 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
CSMD1Q96PZ7 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CSMD1Q96PZ7 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC24.2■■□□□ 1.46
CSMD1Q96PZ7 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC24.19■■□□□ 1.46
CSMD1Q96PZ7 AC044849.2-201ENST00000606596 710 ntBASIC24.19■■□□□ 1.46
CSMD1Q96PZ7 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC24.19■■□□□ 1.46
CSMD1Q96PZ7 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC24.18■■□□□ 1.46
CSMD1Q96PZ7 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC24.18■■□□□ 1.46
CSMD1Q96PZ7 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
CSMD1Q96PZ7 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
CSMD1Q96PZ7 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC24.15■■□□□ 1.46
CSMD1Q96PZ7 MIR762-201ENST00000390236 83 ntBASIC24.14■■□□□ 1.45
CSMD1Q96PZ7 HSD17B1P1-201ENST00000590052 955 ntBASIC24.13■■□□□ 1.45
CSMD1Q96PZ7 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
CSMD1Q96PZ7 AL133380.1-201ENST00000506013 324 ntBASIC24.13■■□□□ 1.45
CSMD1Q96PZ7 EBPL-202ENST00000378268 680 ntTSL 3 BASIC24.1■■□□□ 1.45
CSMD1Q96PZ7 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC24.09■■□□□ 1.45
CSMD1Q96PZ7 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC24.09■■□□□ 1.45
CSMD1Q96PZ7 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC24.07■■□□□ 1.44
CSMD1Q96PZ7 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
CSMD1Q96PZ7 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC24.04■■□□□ 1.44
CSMD1Q96PZ7 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC24.03■■□□□ 1.44
CSMD1Q96PZ7 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC24.02■■□□□ 1.44
CSMD1Q96PZ7 AC005559.1-201ENST00000589661 871 ntBASIC24.02■■□□□ 1.44
CSMD1Q96PZ7 MIR639-201ENST00000384974 98 ntBASIC24.01■■□□□ 1.43
CSMD1Q96PZ7 ZNRF2P2-203ENST00000454624 420 ntBASIC24.01■■□□□ 1.43
CSMD1Q96PZ7 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
CSMD1Q96PZ7 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC24■■□□□ 1.43
CSMD1Q96PZ7 CHML-205ENST00000638160 705 ntTSL 3 BASIC24■■□□□ 1.43
CSMD1Q96PZ7 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
CSMD1Q96PZ7 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC23.99■■□□□ 1.43
CSMD1Q96PZ7 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CSMD1Q96PZ7 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CSMD1Q96PZ7 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CSMD1Q96PZ7 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
CSMD1Q96PZ7 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC23.93■■□□□ 1.42
CSMD1Q96PZ7 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
CSMD1Q96PZ7 HGH1-207ENST00000628266 258 ntTSL 5 BASIC23.93■■□□□ 1.42
CSMD1Q96PZ7 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC23.92■■□□□ 1.42
CSMD1Q96PZ7 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CSMD1Q96PZ7 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC23.91■■□□□ 1.42
CSMD1Q96PZ7 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CSMD1Q96PZ7 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC23.89■■□□□ 1.42
CSMD1Q96PZ7 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC23.89■■□□□ 1.41
CSMD1Q96PZ7 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CSMD1Q96PZ7 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
CSMD1Q96PZ7 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC23.88■■□□□ 1.41
CSMD1Q96PZ7 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CSMD1Q96PZ7 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC23.88■■□□□ 1.41
CSMD1Q96PZ7 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CSMD1Q96PZ7 MACF1-219ENST00000484793 834 ntTSL 2 BASIC23.87■■□□□ 1.41
CSMD1Q96PZ7 CALM3-209ENST00000597743 577 ntTSL 4 BASIC23.86■■□□□ 1.41
CSMD1Q96PZ7 BRD4-212ENST00000630599 726 ntTSL 2 BASIC23.86■■□□□ 1.41
CSMD1Q96PZ7 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC23.83■■□□□ 1.41
CSMD1Q96PZ7 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
CSMD1Q96PZ7 BOD1-206ENST00000480951 814 ntTSL 2 BASIC23.83■■□□□ 1.4
CSMD1Q96PZ7 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC23.82■■□□□ 1.4
CSMD1Q96PZ7 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CSMD1Q96PZ7 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC23.81■■□□□ 1.4
CSMD1Q96PZ7 MVK-208ENST00000539696 608 ntTSL 5 BASIC23.81■■□□□ 1.4
CSMD1Q96PZ7 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC23.81■■□□□ 1.4
CSMD1Q96PZ7 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC23.8■■□□□ 1.4
CSMD1Q96PZ7 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CSMD1Q96PZ7 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
CSMD1Q96PZ7 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CSMD1Q96PZ7 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CSMD1Q96PZ7 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms