Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC20■□□□□ 0.79
CSMD3Q7Z407 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CSMD3Q7Z407 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC19.99■□□□□ 0.79
CSMD3Q7Z407 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CSMD3Q7Z407 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
CSMD3Q7Z407 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CSMD3Q7Z407 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CSMD3Q7Z407 MIR7108-201ENST00000614319 87 ntBASIC19.96■□□□□ 0.79
CSMD3Q7Z407 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC19.95■□□□□ 0.78
CSMD3Q7Z407 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CSMD3Q7Z407 AC087741.3-201ENST00000624270 1347 ntBASIC19.93■□□□□ 0.78
CSMD3Q7Z407 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CSMD3Q7Z407 DUX4L28-201ENST00000623687 678 ntBASIC19.92■□□□□ 0.78
CSMD3Q7Z407 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CSMD3Q7Z407 PVT1-219ENST00000523427 938 ntTSL 3 BASIC19.9■□□□□ 0.78
CSMD3Q7Z407 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC19.9■□□□□ 0.78
CSMD3Q7Z407 MIR3665-201ENST00000578708 105 ntBASIC19.89■□□□□ 0.78
CSMD3Q7Z407 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CSMD3Q7Z407 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
CSMD3Q7Z407 AL133380.1-201ENST00000506013 324 ntBASIC19.88■□□□□ 0.77
CSMD3Q7Z407 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC19.87■□□□□ 0.77
CSMD3Q7Z407 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CSMD3Q7Z407 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CSMD3Q7Z407 MLEC-202ENST00000412616 841 ntTSL 3 BASIC19.85■□□□□ 0.77
CSMD3Q7Z407 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CSMD3Q7Z407 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CSMD3Q7Z407 MBP-237ENST00000579129 1052 ntTSL 5 BASIC19.83■□□□□ 0.76
CSMD3Q7Z407 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CSMD3Q7Z407 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC19.8■□□□□ 0.76
CSMD3Q7Z407 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC19.8■□□□□ 0.76
CSMD3Q7Z407 EBPL-202ENST00000378268 680 ntTSL 3 BASIC19.79■□□□□ 0.76
CSMD3Q7Z407 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC19.79■□□□□ 0.76
CSMD3Q7Z407 MVK-208ENST00000539696 608 ntTSL 5 BASIC19.79■□□□□ 0.76
CSMD3Q7Z407 RPS2-202ENST00000526522 924 ntTSL 2 BASIC19.78■□□□□ 0.76
CSMD3Q7Z407 MIR762-201ENST00000390236 83 ntBASIC19.76■□□□□ 0.75
CSMD3Q7Z407 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC19.76■□□□□ 0.75
CSMD3Q7Z407 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC19.76■□□□□ 0.75
CSMD3Q7Z407 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC19.76■□□□□ 0.75
CSMD3Q7Z407 ILK-212ENST00000532063 1617 ntTSL 2 BASIC19.75■□□□□ 0.75
CSMD3Q7Z407 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CSMD3Q7Z407 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CSMD3Q7Z407 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CSMD3Q7Z407 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CSMD3Q7Z407 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CSMD3Q7Z407 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC19.71■□□□□ 0.75
CSMD3Q7Z407 AC044849.2-201ENST00000606596 710 ntBASIC19.71■□□□□ 0.75
CSMD3Q7Z407 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
CSMD3Q7Z407 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CSMD3Q7Z407 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CSMD3Q7Z407 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CSMD3Q7Z407 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC19.69■□□□□ 0.74
CSMD3Q7Z407 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
CSMD3Q7Z407 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
CSMD3Q7Z407 AC005559.1-201ENST00000589661 871 ntBASIC19.68■□□□□ 0.74
CSMD3Q7Z407 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
CSMD3Q7Z407 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC19.65■□□□□ 0.74
CSMD3Q7Z407 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC19.64■□□□□ 0.73
CSMD3Q7Z407 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC19.64■□□□□ 0.73
CSMD3Q7Z407 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CSMD3Q7Z407 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC19.62■□□□□ 0.73
CSMD3Q7Z407 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC19.62■□□□□ 0.73
CSMD3Q7Z407 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC19.62■□□□□ 0.73
CSMD3Q7Z407 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC19.61■□□□□ 0.73
CSMD3Q7Z407 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CSMD3Q7Z407 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CSMD3Q7Z407 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC19.6■□□□□ 0.73
CSMD3Q7Z407 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CSMD3Q7Z407 CHML-205ENST00000638160 705 ntTSL 3 BASIC19.6■□□□□ 0.73
CSMD3Q7Z407 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC19.59■□□□□ 0.73
CSMD3Q7Z407 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CSMD3Q7Z407 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC19.59■□□□□ 0.73
CSMD3Q7Z407 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CSMD3Q7Z407 MIR4449-201ENST00000578365 66 ntBASIC19.58■□□□□ 0.72
CSMD3Q7Z407 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CSMD3Q7Z407 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC19.56■□□□□ 0.72
CSMD3Q7Z407 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC19.56■□□□□ 0.72
CSMD3Q7Z407 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CSMD3Q7Z407 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
CSMD3Q7Z407 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CSMD3Q7Z407 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CSMD3Q7Z407 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
CSMD3Q7Z407 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC19.54■□□□□ 0.72
CSMD3Q7Z407 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CSMD3Q7Z407 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CSMD3Q7Z407 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC19.53■□□□□ 0.72
CSMD3Q7Z407 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CSMD3Q7Z407 DENR-202ENST00000455982 1052 ntTSL 5 BASIC19.53■□□□□ 0.72
CSMD3Q7Z407 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CSMD3Q7Z407 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CSMD3Q7Z407 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC19.51■□□□□ 0.71
CSMD3Q7Z407 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
CSMD3Q7Z407 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CSMD3Q7Z407 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC19.48■□□□□ 0.71
CSMD3Q7Z407 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CSMD3Q7Z407 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
CSMD3Q7Z407 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CSMD3Q7Z407 HGH1-207ENST00000628266 258 ntTSL 5 BASIC19.45■□□□□ 0.7
CSMD3Q7Z407 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CSMD3Q7Z407 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CSMD3Q7Z407 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 13.9 ms