Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VPS13DQ5THJ4 MVK-208ENST00000539696 608 ntTSL 5 BASIC19.3■□□□□ 0.68
VPS13DQ5THJ4 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS13DQ5THJ4 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC19.29■□□□□ 0.68
VPS13DQ5THJ4 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC19.25■□□□□ 0.67
VPS13DQ5THJ4 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VPS13DQ5THJ4 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS13DQ5THJ4 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
VPS13DQ5THJ4 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VPS13DQ5THJ4 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
VPS13DQ5THJ4 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS13DQ5THJ4 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VPS13DQ5THJ4 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS13DQ5THJ4 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS13DQ5THJ4 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
VPS13DQ5THJ4 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC19.2■□□□□ 0.66
VPS13DQ5THJ4 MIR3665-201ENST00000578708 105 ntBASIC19.2■□□□□ 0.66
VPS13DQ5THJ4 DUX4L28-201ENST00000623687 678 ntBASIC19.19■□□□□ 0.66
VPS13DQ5THJ4 MIR762-201ENST00000390236 83 ntBASIC19.18■□□□□ 0.66
VPS13DQ5THJ4 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC19.18■□□□□ 0.66
VPS13DQ5THJ4 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VPS13DQ5THJ4 ABHD17AP4-201ENST00000411545 909 ntBASIC19.18■□□□□ 0.66
VPS13DQ5THJ4 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC19.18■□□□□ 0.66
VPS13DQ5THJ4 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC19.17■□□□□ 0.66
VPS13DQ5THJ4 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS13DQ5THJ4 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VPS13DQ5THJ4 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS13DQ5THJ4 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS13DQ5THJ4 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS13DQ5THJ4 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VPS13DQ5THJ4 AC087741.3-201ENST00000624270 1347 ntBASIC19.11■□□□□ 0.65
VPS13DQ5THJ4 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS13DQ5THJ4 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS13DQ5THJ4 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC19.11■□□□□ 0.65
VPS13DQ5THJ4 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS13DQ5THJ4 EBPL-202ENST00000378268 680 ntTSL 3 BASIC19.1■□□□□ 0.65
VPS13DQ5THJ4 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
VPS13DQ5THJ4 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC19.07■□□□□ 0.64
VPS13DQ5THJ4 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
VPS13DQ5THJ4 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
VPS13DQ5THJ4 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS13DQ5THJ4 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC19.05■□□□□ 0.64
VPS13DQ5THJ4 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
VPS13DQ5THJ4 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS13DQ5THJ4 HLA-V-202ENST00000446817 847 ntBASIC19.04■□□□□ 0.64
VPS13DQ5THJ4 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS13DQ5THJ4 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC19.02■□□□□ 0.64
VPS13DQ5THJ4 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC19.02■□□□□ 0.64
VPS13DQ5THJ4 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS13DQ5THJ4 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC19.01■□□□□ 0.63
VPS13DQ5THJ4 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC19.01■□□□□ 0.63
VPS13DQ5THJ4 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VPS13DQ5THJ4 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS13DQ5THJ4 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS13DQ5THJ4 AC005559.1-201ENST00000589661 871 ntBASIC18.99■□□□□ 0.63
VPS13DQ5THJ4 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS13DQ5THJ4 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC18.97■□□□□ 0.63
VPS13DQ5THJ4 PVT1-219ENST00000523427 938 ntTSL 3 BASIC18.97■□□□□ 0.63
VPS13DQ5THJ4 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VPS13DQ5THJ4 MLEC-202ENST00000412616 841 ntTSL 3 BASIC18.97■□□□□ 0.63
VPS13DQ5THJ4 MIR7108-201ENST00000614319 87 ntBASIC18.97■□□□□ 0.63
VPS13DQ5THJ4 CHML-205ENST00000638160 705 ntTSL 3 BASIC18.97■□□□□ 0.63
VPS13DQ5THJ4 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS13DQ5THJ4 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VPS13DQ5THJ4 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC18.96■□□□□ 0.63
VPS13DQ5THJ4 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS13DQ5THJ4 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS13DQ5THJ4 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC18.96■□□□□ 0.63
VPS13DQ5THJ4 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC18.95■□□□□ 0.62
VPS13DQ5THJ4 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC18.95■□□□□ 0.62
VPS13DQ5THJ4 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC18.95■□□□□ 0.62
VPS13DQ5THJ4 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC18.93■□□□□ 0.62
VPS13DQ5THJ4 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC18.93■□□□□ 0.62
VPS13DQ5THJ4 MBP-237ENST00000579129 1052 ntTSL 5 BASIC18.93■□□□□ 0.62
VPS13DQ5THJ4 DENR-202ENST00000455982 1052 ntTSL 5 BASIC18.93■□□□□ 0.62
VPS13DQ5THJ4 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VPS13DQ5THJ4 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC18.92■□□□□ 0.62
VPS13DQ5THJ4 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS13DQ5THJ4 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC18.9■□□□□ 0.62
VPS13DQ5THJ4 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
VPS13DQ5THJ4 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS13DQ5THJ4 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS13DQ5THJ4 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS13DQ5THJ4 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS13DQ5THJ4 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
VPS13DQ5THJ4 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
VPS13DQ5THJ4 AC044849.2-201ENST00000606596 710 ntBASIC18.88■□□□□ 0.61
VPS13DQ5THJ4 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS13DQ5THJ4 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC18.88■□□□□ 0.61
VPS13DQ5THJ4 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS13DQ5THJ4 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS13DQ5THJ4 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC18.86■□□□□ 0.61
VPS13DQ5THJ4 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC18.86■□□□□ 0.61
VPS13DQ5THJ4 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
VPS13DQ5THJ4 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS13DQ5THJ4 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VPS13DQ5THJ4 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VPS13DQ5THJ4 RPS2-202ENST00000526522 924 ntTSL 2 BASIC18.84■□□□□ 0.61
VPS13DQ5THJ4 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC18.84■□□□□ 0.61
VPS13DQ5THJ4 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 9.5 ms