Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
COL7A1Q02388 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC20.71■□□□□ 0.91
COL7A1Q02388 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
COL7A1Q02388 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL7A1Q02388 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC20.7■□□□□ 0.9
COL7A1Q02388 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL7A1Q02388 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL7A1Q02388 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC20.69■□□□□ 0.9
COL7A1Q02388 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL7A1Q02388 MIR3665-201ENST00000578708 105 ntBASIC20.68■□□□□ 0.9
COL7A1Q02388 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL7A1Q02388 MLEC-202ENST00000412616 841 ntTSL 3 BASIC20.67■□□□□ 0.9
COL7A1Q02388 AC087741.3-201ENST00000624270 1347 ntBASIC20.67■□□□□ 0.9
COL7A1Q02388 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL7A1Q02388 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL7A1Q02388 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
COL7A1Q02388 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC20.63■□□□□ 0.89
COL7A1Q02388 DUX4L28-201ENST00000623687 678 ntBASIC20.62■□□□□ 0.89
COL7A1Q02388 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC20.61■□□□□ 0.89
COL7A1Q02388 MBP-237ENST00000579129 1052 ntTSL 5 BASIC20.61■□□□□ 0.89
COL7A1Q02388 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC20.6■□□□□ 0.89
COL7A1Q02388 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC20.57■□□□□ 0.88
COL7A1Q02388 AL133380.1-201ENST00000506013 324 ntBASIC20.57■□□□□ 0.88
COL7A1Q02388 RPS2-202ENST00000526522 924 ntTSL 2 BASIC20.57■□□□□ 0.88
COL7A1Q02388 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL7A1Q02388 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL7A1Q02388 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL7A1Q02388 AC044849.2-201ENST00000606596 710 ntBASIC20.54■□□□□ 0.88
COL7A1Q02388 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC20.54■□□□□ 0.88
COL7A1Q02388 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC20.52■□□□□ 0.88
COL7A1Q02388 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
COL7A1Q02388 MVK-208ENST00000539696 608 ntTSL 5 BASIC20.52■□□□□ 0.88
COL7A1Q02388 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL7A1Q02388 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL7A1Q02388 EBPL-202ENST00000378268 680 ntTSL 3 BASIC20.5■□□□□ 0.87
COL7A1Q02388 AC005559.1-201ENST00000589661 871 ntBASIC20.48■□□□□ 0.87
COL7A1Q02388 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL7A1Q02388 MIR762-201ENST00000390236 83 ntBASIC20.46■□□□□ 0.87
COL7A1Q02388 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC20.46■□□□□ 0.87
COL7A1Q02388 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL7A1Q02388 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL7A1Q02388 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC20.43■□□□□ 0.86
COL7A1Q02388 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC20.43■□□□□ 0.86
COL7A1Q02388 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
COL7A1Q02388 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC20.43■□□□□ 0.86
COL7A1Q02388 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL7A1Q02388 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC20.4■□□□□ 0.86
COL7A1Q02388 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC20.4■□□□□ 0.86
COL7A1Q02388 MIR4449-201ENST00000578365 66 ntBASIC20.4■□□□□ 0.86
COL7A1Q02388 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC20.4■□□□□ 0.86
COL7A1Q02388 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL7A1Q02388 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC20.39■□□□□ 0.85
COL7A1Q02388 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC20.39■□□□□ 0.85
COL7A1Q02388 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC20.38■□□□□ 0.85
COL7A1Q02388 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL7A1Q02388 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL7A1Q02388 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
COL7A1Q02388 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL7A1Q02388 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC20.35■□□□□ 0.85
COL7A1Q02388 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC20.35■□□□□ 0.85
COL7A1Q02388 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
COL7A1Q02388 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
COL7A1Q02388 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC20.33■□□□□ 0.85
COL7A1Q02388 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC20.33■□□□□ 0.85
COL7A1Q02388 ILK-212ENST00000532063 1617 ntTSL 2 BASIC20.33■□□□□ 0.84
COL7A1Q02388 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL7A1Q02388 CHML-205ENST00000638160 705 ntTSL 3 BASIC20.32■□□□□ 0.84
COL7A1Q02388 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL7A1Q02388 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC20.3■□□□□ 0.84
COL7A1Q02388 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC20.3■□□□□ 0.84
COL7A1Q02388 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL7A1Q02388 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC20.28■□□□□ 0.84
COL7A1Q02388 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL7A1Q02388 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL7A1Q02388 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
COL7A1Q02388 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL7A1Q02388 BOD1-206ENST00000480951 814 ntTSL 2 BASIC20.26■□□□□ 0.83
COL7A1Q02388 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL7A1Q02388 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC20.25■□□□□ 0.83
COL7A1Q02388 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
COL7A1Q02388 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL7A1Q02388 ZNRF2P2-203ENST00000454624 420 ntBASIC20.22■□□□□ 0.83
COL7A1Q02388 HSD17B1P1-201ENST00000590052 955 ntBASIC20.22■□□□□ 0.83
COL7A1Q02388 DENR-202ENST00000455982 1052 ntTSL 5 BASIC20.21■□□□□ 0.83
COL7A1Q02388 HGH1-207ENST00000628266 258 ntTSL 5 BASIC20.21■□□□□ 0.83
COL7A1Q02388 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL7A1Q02388 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC20.2■□□□□ 0.82
COL7A1Q02388 MIR639-201ENST00000384974 98 ntBASIC20.2■□□□□ 0.82
COL7A1Q02388 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL7A1Q02388 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL7A1Q02388 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC20.19■□□□□ 0.82
COL7A1Q02388 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL7A1Q02388 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL7A1Q02388 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
COL7A1Q02388 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL7A1Q02388 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL7A1Q02388 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
COL7A1Q02388 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
COL7A1Q02388 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC20.13■□□□□ 0.81
COL7A1Q02388 MIR3648-2-201ENST00000581792 180 ntBASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 13.9 ms