Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
FOXA3P55318 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
FOXA3P55318 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
FOXA3P55318 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
FOXA3P55318 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
FOXA3P55318 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
FOXA3P55318 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
FOXA3P55318 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
FOXA3P55318 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
FOXA3P55318 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
FOXA3P55318 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
FOXA3P55318 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
FOXA3P55318 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC20.78■□□□□ 0.92
FOXA3P55318 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC20.78■□□□□ 0.92
FOXA3P55318 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
FOXA3P55318 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
FOXA3P55318 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
FOXA3P55318 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
FOXA3P55318 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC20.76■□□□□ 0.91
FOXA3P55318 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
FOXA3P55318 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
FOXA3P55318 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
FOXA3P55318 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC20.72■□□□□ 0.91
FOXA3P55318 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC20.72■□□□□ 0.91
FOXA3P55318 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
FOXA3P55318 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC20.71■□□□□ 0.91
FOXA3P55318 ABCB10P1-201ENST00000614297 2181 ntBASIC20.71■□□□□ 0.91
FOXA3P55318 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
FOXA3P55318 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
FOXA3P55318 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
FOXA3P55318 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
FOXA3P55318 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
FOXA3P55318 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
FOXA3P55318 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
FOXA3P55318 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
FOXA3P55318 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC20.65■□□□□ 0.9
FOXA3P55318 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
FOXA3P55318 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
FOXA3P55318 ABCB10P3-201ENST00000561950 2166 ntBASIC20.64■□□□□ 0.89
FOXA3P55318 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
FOXA3P55318 SHF-206ENST00000560471 2499 ntTSL 5 BASIC20.64■□□□□ 0.89
FOXA3P55318 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
FOXA3P55318 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
FOXA3P55318 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
FOXA3P55318 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
FOXA3P55318 AL161658.1-201ENST00000623641 1967 ntBASIC20.63■□□□□ 0.89
FOXA3P55318 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC20.62■□□□□ 0.89
FOXA3P55318 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
FOXA3P55318 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
FOXA3P55318 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
FOXA3P55318 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
FOXA3P55318 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
FOXA3P55318 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
FOXA3P55318 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
FOXA3P55318 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
FOXA3P55318 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC20.59■□□□□ 0.89
FOXA3P55318 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
FOXA3P55318 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC20.56■□□□□ 0.88
FOXA3P55318 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
FOXA3P55318 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC20.55■□□□□ 0.88
FOXA3P55318 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
FOXA3P55318 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
FOXA3P55318 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
FOXA3P55318 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
FOXA3P55318 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
FOXA3P55318 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
FOXA3P55318 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
FOXA3P55318 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
FOXA3P55318 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
FOXA3P55318 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC20.5■□□□□ 0.87
FOXA3P55318 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
FOXA3P55318 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
FOXA3P55318 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC20.5■□□□□ 0.87
FOXA3P55318 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
FOXA3P55318 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
FOXA3P55318 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
FOXA3P55318 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC20.47■□□□□ 0.87
FOXA3P55318 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
FOXA3P55318 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
FOXA3P55318 AC120057.4-201ENST00000624722 1615 ntBASIC20.45■□□□□ 0.87
FOXA3P55318 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
FOXA3P55318 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
FOXA3P55318 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC20.44■□□□□ 0.86
FOXA3P55318 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
FOXA3P55318 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
FOXA3P55318 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC20.43■□□□□ 0.86
FOXA3P55318 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
FOXA3P55318 AC139426.1-201ENST00000568218 2529 ntBASIC20.43■□□□□ 0.86
FOXA3P55318 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
FOXA3P55318 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
FOXA3P55318 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
FOXA3P55318 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC20.4■□□□□ 0.86
FOXA3P55318 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
FOXA3P55318 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
FOXA3P55318 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC20.39■□□□□ 0.86
FOXA3P55318 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
FOXA3P55318 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
FOXA3P55318 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
FOXA3P55318 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
FOXA3P55318 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms