Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC29.98■■■□□ 2.39
SCN1AP35498 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC29.98■■■□□ 2.39
SCN1AP35498 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC29.98■■■□□ 2.39
SCN1AP35498 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.39
SCN1AP35498 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.38
SCN1AP35498 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC29.93■■■□□ 2.38
SCN1AP35498 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC29.93■■■□□ 2.38
SCN1AP35498 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
SCN1AP35498 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
SCN1AP35498 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC29.9■■■□□ 2.38
SCN1AP35498 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
SCN1AP35498 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
SCN1AP35498 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC29.87■■■□□ 2.37
SCN1AP35498 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC29.86■■■□□ 2.37
SCN1AP35498 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
SCN1AP35498 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
SCN1AP35498 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
SCN1AP35498 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
SCN1AP35498 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC29.85■■■□□ 2.37
SCN1AP35498 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC29.84■■■□□ 2.37
SCN1AP35498 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
SCN1AP35498 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
SCN1AP35498 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC29.83■■■□□ 2.37
SCN1AP35498 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC29.82■■■□□ 2.36
SCN1AP35498 AC097358.2-201ENST00000607541 1159 ntBASIC29.82■■■□□ 2.36
SCN1AP35498 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC29.81■■■□□ 2.36
SCN1AP35498 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
SCN1AP35498 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC29.79■■■□□ 2.36
SCN1AP35498 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
SCN1AP35498 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC29.78■■■□□ 2.36
SCN1AP35498 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC29.78■■■□□ 2.36
SCN1AP35498 AL133380.1-201ENST00000506013 324 ntBASIC29.78■■■□□ 2.36
SCN1AP35498 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC29.76■■■□□ 2.35
SCN1AP35498 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
SCN1AP35498 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC29.69■■■□□ 2.34
SCN1AP35498 SUZ12P1-203ENST00000578195 985 ntBASIC29.68■■■□□ 2.34
SCN1AP35498 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
SCN1AP35498 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC29.66■■■□□ 2.34
SCN1AP35498 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC29.65■■■□□ 2.34
SCN1AP35498 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC29.64■■■□□ 2.33
SCN1AP35498 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC29.64■■■□□ 2.33
SCN1AP35498 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.33
SCN1AP35498 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC29.63■■■□□ 2.33
SCN1AP35498 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
SCN1AP35498 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
SCN1AP35498 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
SCN1AP35498 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC29.59■■■□□ 2.33
SCN1AP35498 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
SCN1AP35498 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
SCN1AP35498 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
SCN1AP35498 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
SCN1AP35498 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC29.57■■■□□ 2.32
SCN1AP35498 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
SCN1AP35498 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
SCN1AP35498 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC29.57■■■□□ 2.32
SCN1AP35498 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC29.56■■■□□ 2.32
SCN1AP35498 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
SCN1AP35498 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC29.55■■■□□ 2.32
SCN1AP35498 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC29.55■■■□□ 2.32
SCN1AP35498 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
SCN1AP35498 AL391121.1-201ENST00000607967 1349 ntBASIC29.54■■■□□ 2.32
SCN1AP35498 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
SCN1AP35498 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC29.54■■■□□ 2.32
SCN1AP35498 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC29.53■■■□□ 2.32
SCN1AP35498 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC29.52■■■□□ 2.32
SCN1AP35498 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC29.51■■■□□ 2.32
SCN1AP35498 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC29.51■■■□□ 2.31
SCN1AP35498 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
SCN1AP35498 CAHM-201ENST00000604200 896 ntBASIC29.5■■■□□ 2.31
SCN1AP35498 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
SCN1AP35498 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
SCN1AP35498 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC29.46■■■□□ 2.31
SCN1AP35498 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC29.44■■■□□ 2.3
SCN1AP35498 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC29.44■■■□□ 2.3
SCN1AP35498 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC29.43■■■□□ 2.3
SCN1AP35498 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
SCN1AP35498 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
SCN1AP35498 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC29.41■■■□□ 2.3
SCN1AP35498 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
SCN1AP35498 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
SCN1AP35498 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC29.39■■■□□ 2.3
SCN1AP35498 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
SCN1AP35498 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
SCN1AP35498 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
SCN1AP35498 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC29.38■■■□□ 2.29
SCN1AP35498 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
SCN1AP35498 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC29.37■■■□□ 2.29
SCN1AP35498 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC29.37■■■□□ 2.29
SCN1AP35498 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
SCN1AP35498 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC29.33■■■□□ 2.29
SCN1AP35498 EBPL-202ENST00000378268 680 ntTSL 3 BASIC29.33■■■□□ 2.29
SCN1AP35498 HNRNPLP2-201ENST00000568980 1570 ntBASIC29.32■■■□□ 2.28
SCN1AP35498 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
SCN1AP35498 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
SCN1AP35498 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
SCN1AP35498 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
SCN1AP35498 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
SCN1AP35498 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
SCN1AP35498 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
SCN1AP35498 AC120057.4-201ENST00000624722 1615 ntBASIC29.28■■■□□ 2.28
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms