Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC29.98■■■□□ 2.39
SCN1AP35498 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC29.98■■■□□ 2.39
SCN1AP35498 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC29.98■■■□□ 2.39
SCN1AP35498 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.39
SCN1AP35498 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.38
SCN1AP35498 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC29.93■■■□□ 2.38
SCN1AP35498 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC29.93■■■□□ 2.38
SCN1AP35498 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
SCN1AP35498 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
SCN1AP35498 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC29.9■■■□□ 2.38
SCN1AP35498 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
SCN1AP35498 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
SCN1AP35498 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC29.87■■■□□ 2.37
SCN1AP35498 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC29.86■■■□□ 2.37
SCN1AP35498 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
SCN1AP35498 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
SCN1AP35498 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
SCN1AP35498 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
SCN1AP35498 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC29.85■■■□□ 2.37
SCN1AP35498 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC29.84■■■□□ 2.37
SCN1AP35498 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
SCN1AP35498 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
SCN1AP35498 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC29.83■■■□□ 2.37
SCN1AP35498 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC29.82■■■□□ 2.36
SCN1AP35498 AC097358.2-201ENST00000607541 1159 ntBASIC29.82■■■□□ 2.36
SCN1AP35498 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC29.81■■■□□ 2.36
SCN1AP35498 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
SCN1AP35498 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC29.79■■■□□ 2.36
SCN1AP35498 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
SCN1AP35498 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC29.78■■■□□ 2.36
SCN1AP35498 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC29.78■■■□□ 2.36
SCN1AP35498 AL133380.1-201ENST00000506013 324 ntBASIC29.78■■■□□ 2.36
SCN1AP35498 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC29.76■■■□□ 2.35
SCN1AP35498 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
SCN1AP35498 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC29.69■■■□□ 2.34
SCN1AP35498 SUZ12P1-203ENST00000578195 985 ntBASIC29.68■■■□□ 2.34
SCN1AP35498 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
SCN1AP35498 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC29.66■■■□□ 2.34
SCN1AP35498 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC29.65■■■□□ 2.34
SCN1AP35498 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC29.64■■■□□ 2.33
SCN1AP35498 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC29.64■■■□□ 2.33
SCN1AP35498 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.33
SCN1AP35498 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC29.63■■■□□ 2.33
SCN1AP35498 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
SCN1AP35498 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
SCN1AP35498 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
SCN1AP35498 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC29.59■■■□□ 2.33
SCN1AP35498 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
SCN1AP35498 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
SCN1AP35498 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
SCN1AP35498 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
SCN1AP35498 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC29.57■■■□□ 2.32
SCN1AP35498 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
SCN1AP35498 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
SCN1AP35498 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC29.57■■■□□ 2.32
SCN1AP35498 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC29.56■■■□□ 2.32
SCN1AP35498 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
SCN1AP35498 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC29.55■■■□□ 2.32
SCN1AP35498 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC29.55■■■□□ 2.32
SCN1AP35498 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
SCN1AP35498 AL391121.1-201ENST00000607967 1349 ntBASIC29.54■■■□□ 2.32
SCN1AP35498 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
SCN1AP35498 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC29.54■■■□□ 2.32
SCN1AP35498 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC29.53■■■□□ 2.32
SCN1AP35498 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC29.52■■■□□ 2.32
SCN1AP35498 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC29.51■■■□□ 2.32
SCN1AP35498 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC29.51■■■□□ 2.31
SCN1AP35498 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
SCN1AP35498 CAHM-201ENST00000604200 896 ntBASIC29.5■■■□□ 2.31
SCN1AP35498 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
SCN1AP35498 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
SCN1AP35498 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC29.46■■■□□ 2.31
SCN1AP35498 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC29.44■■■□□ 2.3
SCN1AP35498 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC29.44■■■□□ 2.3
SCN1AP35498 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC29.43■■■□□ 2.3
SCN1AP35498 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
SCN1AP35498 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
SCN1AP35498 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC29.41■■■□□ 2.3
SCN1AP35498 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
SCN1AP35498 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
SCN1AP35498 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC29.39■■■□□ 2.3
SCN1AP35498 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
SCN1AP35498 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
SCN1AP35498 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
SCN1AP35498 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC29.38■■■□□ 2.29
SCN1AP35498 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
SCN1AP35498 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC29.37■■■□□ 2.29
SCN1AP35498 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC29.37■■■□□ 2.29
SCN1AP35498 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
SCN1AP35498 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC29.33■■■□□ 2.29
SCN1AP35498 EBPL-202ENST00000378268 680 ntTSL 3 BASIC29.33■■■□□ 2.29
SCN1AP35498 HNRNPLP2-201ENST00000568980 1570 ntBASIC29.32■■■□□ 2.28
SCN1AP35498 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
SCN1AP35498 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
SCN1AP35498 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
SCN1AP35498 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
SCN1AP35498 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
SCN1AP35498 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
SCN1AP35498 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
SCN1AP35498 AC120057.4-201ENST00000624722 1615 ntBASIC29.28■■■□□ 2.28
Retrieved 100 of 98,524 protein–RNA pairs in 12.9 ms