Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC36.92■■■■□ 3.5
SCN1AP35498 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC36.22■■■■□ 3.39
SCN1AP35498 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC35.9■■■■□ 3.34
SCN1AP35498 AL356512.1-201ENST00000607453 1739 ntBASIC35.86■■■■□ 3.33
SCN1AP35498 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC35.82■■■■□ 3.32
SCN1AP35498 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC35.75■■■■□ 3.31
SCN1AP35498 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC35.66■■■■□ 3.3
SCN1AP35498 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC35.13■■■■□ 3.21
SCN1AP35498 HES6-203ENST00000409160 1600 ntTSL 2 BASIC35.1■■■■□ 3.21
SCN1AP35498 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC34.96■■■■□ 3.19
SCN1AP35498 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC34.84■■■■□ 3.17
SCN1AP35498 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC34.64■■■■□ 3.14
SCN1AP35498 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC34.53■■■■□ 3.12
SCN1AP35498 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC34.39■■■■□ 3.1
SCN1AP35498 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC34.35■■■■□ 3.09
SCN1AP35498 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC34.33■■■■□ 3.09
SCN1AP35498 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC34.31■■■■□ 3.08
SCN1AP35498 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC34.29■■■■□ 3.08
SCN1AP35498 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC34.15■■■■□ 3.06
SCN1AP35498 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC34.08■■■■□ 3.05
SCN1AP35498 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC33.87■■■■□ 3.01
SCN1AP35498 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC33.59■■■□□ 2.97
SCN1AP35498 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC33.53■■■□□ 2.96
SCN1AP35498 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC33.52■■■□□ 2.96
SCN1AP35498 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC33.46■■■□□ 2.95
SCN1AP35498 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC33.37■■■□□ 2.93
SCN1AP35498 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC33.34■■■□□ 2.93
SCN1AP35498 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC33.3■■■□□ 2.92
SCN1AP35498 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC33.24■■■□□ 2.91
SCN1AP35498 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC33.24■■■□□ 2.91
SCN1AP35498 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC33.14■■■□□ 2.9
SCN1AP35498 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC33.09■■■□□ 2.89
SCN1AP35498 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC33.08■■■□□ 2.89
SCN1AP35498 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC33■■■□□ 2.87
SCN1AP35498 INO80B-203ENST00000409917 796 ntTSL 2 BASIC32.95■■■□□ 2.87
SCN1AP35498 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC32.93■■■□□ 2.86
SCN1AP35498 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
SCN1AP35498 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC32.78■■■□□ 2.84
SCN1AP35498 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC32.75■■■□□ 2.83
SCN1AP35498 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC32.75■■■□□ 2.83
SCN1AP35498 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC32.74■■■□□ 2.83
SCN1AP35498 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC32.71■■■□□ 2.83
SCN1AP35498 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC32.69■■■□□ 2.82
SCN1AP35498 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
SCN1AP35498 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC32.65■■■□□ 2.82
SCN1AP35498 AC015813.7-201ENST00000623294 581 ntBASIC32.62■■■□□ 2.81
SCN1AP35498 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC32.53■■■□□ 2.8
SCN1AP35498 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
SCN1AP35498 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
SCN1AP35498 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC32.4■■■□□ 2.78
SCN1AP35498 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC32.34■■■□□ 2.77
SCN1AP35498 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
SCN1AP35498 AC006077.2-201ENST00000623591 457 ntBASIC32.29■■■□□ 2.76
SCN1AP35498 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC32.29■■■□□ 2.76
SCN1AP35498 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC32.23■■■□□ 2.75
SCN1AP35498 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
SCN1AP35498 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC32.2■■■□□ 2.75
SCN1AP35498 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
SCN1AP35498 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC32.13■■■□□ 2.73
SCN1AP35498 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC32.12■■■□□ 2.73
SCN1AP35498 ZNRF2P1-201ENST00000441407 443 ntBASIC32.09■■■□□ 2.73
SCN1AP35498 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC32.03■■■□□ 2.72
SCN1AP35498 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
SCN1AP35498 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
SCN1AP35498 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
SCN1AP35498 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
SCN1AP35498 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
SCN1AP35498 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC31.71■■■□□ 2.67
SCN1AP35498 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
SCN1AP35498 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
SCN1AP35498 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC31.64■■■□□ 2.66
SCN1AP35498 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
SCN1AP35498 ILK-212ENST00000532063 1617 ntTSL 2 BASIC31.6■■■□□ 2.65
SCN1AP35498 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC31.57■■■□□ 2.64
SCN1AP35498 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC31.56■■■□□ 2.64
SCN1AP35498 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
SCN1AP35498 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
SCN1AP35498 AP002365.1-201ENST00000603448 772 ntBASIC31.51■■■□□ 2.64
SCN1AP35498 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
SCN1AP35498 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC31.47■■■□□ 2.63
SCN1AP35498 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
SCN1AP35498 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC31.46■■■□□ 2.63
SCN1AP35498 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC31.4■■■□□ 2.62
SCN1AP35498 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC31.39■■■□□ 2.62
SCN1AP35498 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
SCN1AP35498 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
SCN1AP35498 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC31.36■■■□□ 2.61
SCN1AP35498 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
SCN1AP35498 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
SCN1AP35498 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC31.33■■■□□ 2.61
SCN1AP35498 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
SCN1AP35498 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC31.29■■■□□ 2.6
SCN1AP35498 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC31.27■■■□□ 2.6
SCN1AP35498 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC31.25■■■□□ 2.59
SCN1AP35498 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC31.24■■■□□ 2.59
SCN1AP35498 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC31.23■■■□□ 2.59
SCN1AP35498 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC31.18■■■□□ 2.58
SCN1AP35498 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC31.18■■■□□ 2.58
SCN1AP35498 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC31.17■■■□□ 2.58
SCN1AP35498 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms