Protein–RNA interactions for Protein: P03956

MMP1, Interstitial collagenase, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP1P03956 EBPL-203ENST00000378270 579 ntTSL 2 BASIC32.14■■■□□ 2.74
MMP1P03956 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC32.14■■■□□ 2.74
MMP1P03956 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC32.14■■■□□ 2.74
MMP1P03956 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
MMP1P03956 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC32.1■■■□□ 2.73
MMP1P03956 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC32.1■■■□□ 2.73
MMP1P03956 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC32.08■■■□□ 2.73
MMP1P03956 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC32.08■■■□□ 2.73
MMP1P03956 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC32.08■■■□□ 2.73
MMP1P03956 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC32.06■■■□□ 2.72
MMP1P03956 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC32.03■■■□□ 2.72
MMP1P03956 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
MMP1P03956 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.72
MMP1P03956 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC32.01■■■□□ 2.71
MMP1P03956 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC32■■■□□ 2.71
MMP1P03956 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
MMP1P03956 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC31.99■■■□□ 2.71
MMP1P03956 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC31.97■■■□□ 2.71
MMP1P03956 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
MMP1P03956 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC31.95■■■□□ 2.71
MMP1P03956 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
MMP1P03956 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC31.94■■■□□ 2.7
MMP1P03956 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
MMP1P03956 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC31.92■■■□□ 2.7
MMP1P03956 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
MMP1P03956 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC31.91■■■□□ 2.7
MMP1P03956 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
MMP1P03956 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
MMP1P03956 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC31.85■■■□□ 2.69
MMP1P03956 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC31.85■■■□□ 2.69
MMP1P03956 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC31.85■■■□□ 2.69
MMP1P03956 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC31.84■■■□□ 2.69
MMP1P03956 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC31.84■■■□□ 2.69
MMP1P03956 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC31.84■■■□□ 2.69
MMP1P03956 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
MMP1P03956 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
MMP1P03956 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
MMP1P03956 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC31.8■■■□□ 2.68
MMP1P03956 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC31.8■■■□□ 2.68
MMP1P03956 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
MMP1P03956 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
MMP1P03956 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC31.78■■■□□ 2.68
MMP1P03956 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC31.77■■■□□ 2.68
MMP1P03956 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC31.77■■■□□ 2.68
MMP1P03956 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC31.77■■■□□ 2.68
MMP1P03956 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC31.76■■■□□ 2.68
MMP1P03956 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC31.76■■■□□ 2.67
MMP1P03956 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC31.75■■■□□ 2.67
MMP1P03956 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC31.75■■■□□ 2.67
MMP1P03956 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC31.75■■■□□ 2.67
MMP1P03956 AC120057.4-201ENST00000624722 1615 ntBASIC31.75■■■□□ 2.67
MMP1P03956 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC31.74■■■□□ 2.67
MMP1P03956 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
MMP1P03956 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
MMP1P03956 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
MMP1P03956 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC31.71■■■□□ 2.67
MMP1P03956 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
MMP1P03956 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
MMP1P03956 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
MMP1P03956 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
MMP1P03956 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC31.69■■■□□ 2.66
MMP1P03956 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
MMP1P03956 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
MMP1P03956 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
MMP1P03956 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC31.64■■■□□ 2.66
MMP1P03956 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
MMP1P03956 ST7-205ENST00000393446 2114 ntTSL 5 BASIC31.63■■■□□ 2.65
MMP1P03956 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC31.61■■■□□ 2.65
MMP1P03956 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC31.61■■■□□ 2.65
MMP1P03956 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC31.6■■■□□ 2.65
MMP1P03956 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
MMP1P03956 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
MMP1P03956 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
MMP1P03956 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
MMP1P03956 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
MMP1P03956 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
MMP1P03956 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC31.56■■■□□ 2.64
MMP1P03956 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
MMP1P03956 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC31.54■■■□□ 2.64
MMP1P03956 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC31.54■■■□□ 2.64
MMP1P03956 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC31.52■■■□□ 2.64
MMP1P03956 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC31.51■■■□□ 2.64
MMP1P03956 ST7-202ENST00000323984 2142 ntTSL 5 BASIC31.51■■■□□ 2.64
MMP1P03956 ST7-207ENST00000393449 2127 ntTSL 5 BASIC31.51■■■□□ 2.64
MMP1P03956 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
MMP1P03956 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC31.5■■■□□ 2.63
MMP1P03956 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
MMP1P03956 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC31.49■■■□□ 2.63
MMP1P03956 KLF16-203ENST00000592313 508 ntTSL 3 BASIC31.49■■■□□ 2.63
MMP1P03956 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC31.47■■■□□ 2.63
MMP1P03956 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
MMP1P03956 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
MMP1P03956 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC31.45■■■□□ 2.63
MMP1P03956 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC31.45■■■□□ 2.62
MMP1P03956 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC31.43■■■□□ 2.62
MMP1P03956 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
MMP1P03956 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC31.42■■■□□ 2.62
MMP1P03956 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC31.42■■■□□ 2.62
MMP1P03956 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC31.41■■■□□ 2.62
MMP1P03956 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC31.41■■■□□ 2.62
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms