Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
UPK1AO00322 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
UPK1AO00322 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC26.46■■□□□ 1.83
UPK1AO00322 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC26.45■■□□□ 1.82
UPK1AO00322 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
UPK1AO00322 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
UPK1AO00322 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC26.39■■□□□ 1.82
UPK1AO00322 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
UPK1AO00322 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC26.39■■□□□ 1.82
UPK1AO00322 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC26.39■■□□□ 1.81
UPK1AO00322 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
UPK1AO00322 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
UPK1AO00322 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC26.38■■□□□ 1.81
UPK1AO00322 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC26.37■■□□□ 1.81
UPK1AO00322 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
UPK1AO00322 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC26.34■■□□□ 1.81
UPK1AO00322 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
UPK1AO00322 DYNLL1-208ENST00000550178 581 ntBASIC26.33■■□□□ 1.81
UPK1AO00322 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC26.33■■□□□ 1.8
UPK1AO00322 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC26.32■■□□□ 1.8
UPK1AO00322 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC26.31■■□□□ 1.8
UPK1AO00322 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC26.31■■□□□ 1.8
UPK1AO00322 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
UPK1AO00322 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
UPK1AO00322 AP002365.1-201ENST00000603448 772 ntBASIC26.27■■□□□ 1.8
UPK1AO00322 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC26.27■■□□□ 1.8
UPK1AO00322 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
UPK1AO00322 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
UPK1AO00322 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC26.25■■□□□ 1.79
UPK1AO00322 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC26.24■■□□□ 1.79
UPK1AO00322 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC26.23■■□□□ 1.79
UPK1AO00322 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC26.23■■□□□ 1.79
UPK1AO00322 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
UPK1AO00322 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
UPK1AO00322 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
UPK1AO00322 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC26.21■■□□□ 1.79
UPK1AO00322 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
UPK1AO00322 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
UPK1AO00322 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC26.2■■□□□ 1.79
UPK1AO00322 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC26.2■■□□□ 1.78
UPK1AO00322 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC26.2■■□□□ 1.78
UPK1AO00322 MVK-208ENST00000539696 608 ntTSL 5 BASIC26.19■■□□□ 1.78
UPK1AO00322 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC26.19■■□□□ 1.78
UPK1AO00322 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC26.18■■□□□ 1.78
UPK1AO00322 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
UPK1AO00322 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
UPK1AO00322 AL031258.1-201ENST00000623562 325 ntBASIC26.16■■□□□ 1.78
UPK1AO00322 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC26.14■■□□□ 1.78
UPK1AO00322 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
UPK1AO00322 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
UPK1AO00322 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
UPK1AO00322 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
UPK1AO00322 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC26.11■■□□□ 1.77
UPK1AO00322 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC26.11■■□□□ 1.77
UPK1AO00322 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC26.1■■□□□ 1.77
UPK1AO00322 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC26.09■■□□□ 1.77
UPK1AO00322 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC26.09■■□□□ 1.77
UPK1AO00322 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC26.08■■□□□ 1.77
UPK1AO00322 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC26.08■■□□□ 1.77
UPK1AO00322 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
UPK1AO00322 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
UPK1AO00322 EBPL-203ENST00000378270 579 ntTSL 2 BASIC26.05■■□□□ 1.76
UPK1AO00322 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC26.05■■□□□ 1.76
UPK1AO00322 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC26.04■■□□□ 1.76
UPK1AO00322 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
UPK1AO00322 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC26.03■■□□□ 1.76
UPK1AO00322 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
UPK1AO00322 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC26■■□□□ 1.75
UPK1AO00322 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
UPK1AO00322 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC25.99■■□□□ 1.75
UPK1AO00322 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC25.98■■□□□ 1.75
UPK1AO00322 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
UPK1AO00322 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC25.98■■□□□ 1.75
UPK1AO00322 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC25.96■■□□□ 1.75
UPK1AO00322 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC25.96■■□□□ 1.75
UPK1AO00322 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC25.96■■□□□ 1.75
UPK1AO00322 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC25.95■■□□□ 1.75
UPK1AO00322 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC25.94■■□□□ 1.74
UPK1AO00322 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC25.94■■□□□ 1.74
UPK1AO00322 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
UPK1AO00322 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
UPK1AO00322 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
UPK1AO00322 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
UPK1AO00322 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
UPK1AO00322 ABCB10P1-201ENST00000614297 2181 ntBASIC25.92■■□□□ 1.74
UPK1AO00322 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
UPK1AO00322 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC25.91■■□□□ 1.74
UPK1AO00322 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
UPK1AO00322 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC25.89■■□□□ 1.74
UPK1AO00322 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
UPK1AO00322 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC25.87■■□□□ 1.73
UPK1AO00322 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
UPK1AO00322 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC25.87■■□□□ 1.73
UPK1AO00322 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
UPK1AO00322 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
UPK1AO00322 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
UPK1AO00322 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.72
UPK1AO00322 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC25.83■■□□□ 1.72
UPK1AO00322 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
UPK1AO00322 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC25.81■■□□□ 1.72
Retrieved 100 of 98,524 protein–RNA pairs in 65.9 ms