Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 KLHDC4-217ENST00000566661 2232 ntTSL 518.07■□□□□ 0.489e-6■■■■□ 24.8
SMNDC1O75940 GPAA1-210ENST00000528073 986 ntTSL 318.03■□□□□ 0.489e-6■■■■□ 24.8
SMNDC1O75940 AMDHD2-209ENST00000563633 1117 ntTSL 517.9■□□□□ 0.469e-6■■■■□ 24.8
SMNDC1O75940 GPAA1-213ENST00000530258 535 ntTSL 417.89■□□□□ 0.459e-6■■■■□ 24.8
SMNDC1O75940 GPAA1-204ENST00000525087 937 ntTSL 517.74■□□□□ 0.439e-6■■■■□ 24.8
SMNDC1O75940 GPAA1-217ENST00000532758 1079 ntTSL 317.74■□□□□ 0.439e-6■■■■□ 24.8
SMNDC1O75940 GPAA1-214ENST00000530633 835 ntTSL 317.71■□□□□ 0.439e-6■■■■□ 24.8
SMNDC1O75940 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.419e-6■■■■□ 24.8
SMNDC1O75940 KLHDC4-207ENST00000562155 1757 ntTSL 517.56■□□□□ 0.49e-6■■■■□ 24.8
SMNDC1O75940 AMDHD2-205ENST00000563145 859 ntTSL 217.54■□□□□ 0.44e-6■■■■□ 24.8
SMNDC1O75940 PLXNB2-205ENST00000432455 1620 ntTSL 517.47■□□□□ 0.399e-6■■■■□ 24.8
SMNDC1O75940 BSG-212ENST00000590218 545 ntTSL 217.24■□□□□ 0.352e-6■■■■□ 24.8
SMNDC1O75940 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.344e-10■■■■□ 24.8
SMNDC1O75940 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.18■□□□□ 0.342e-6■■■■□ 24.8
SMNDC1O75940 EPS8L2-203ENST00000524763 580 ntTSL 317.15■□□□□ 0.349e-6■■■■□ 24.8
SMNDC1O75940 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.334e-6■■■■□ 24.8
SMNDC1O75940 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.339e-6■■■■□ 24.8
SMNDC1O75940 BSG-208ENST00000573784 559 ntTSL 417.12■□□□□ 0.333e-6■■■■□ 24.8
SMNDC1O75940 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.329e-6■■■■□ 24.8
SMNDC1O75940 ACTG1-204ENST00000571721 813 ntTSL 516.91■□□□□ 0.34e-10■■■■□ 24.8
SMNDC1O75940 BSG-211ENST00000576984 544 ntTSL 416.83■□□□□ 0.283e-6■■■■□ 24.8
SMNDC1O75940 NFKBIA-205ENST00000555629 599 ntTSL 216.82■□□□□ 0.289e-6■■■■□ 24.8
SMNDC1O75940 RXRA-201ENST00000356384 5770 ntTSL 516.64■□□□□ 0.256e-6■■■■□ 24.8
SMNDC1O75940 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.254e-10■■■■□ 24.8
SMNDC1O75940 BAIAP2-230ENST00000577097 1014 ntTSL 316.61■□□□□ 0.259e-6■■■■□ 24.8
SMNDC1O75940 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.259e-6■■■■□ 24.8
SMNDC1O75940 DYNC1H1-204ENST00000555062 1351 ntTSL 216.59■□□□□ 0.259e-6■■■■□ 24.8
SMNDC1O75940 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC16.54■□□□□ 0.249e-6■■■■□ 24.8
SMNDC1O75940 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC16.51■□□□□ 0.239e-6■■■■□ 24.8
SMNDC1O75940 GPAA1-205ENST00000525308 903 ntTSL 216.4■□□□□ 0.229e-6■■■■□ 24.8
SMNDC1O75940 KLHDC4-202ENST00000316853 1287 ntTSL 1 (best)16.28■□□□□ 0.29e-6■■■■□ 24.8
SMNDC1O75940 AMDHD2-215ENST00000568263 1482 ntTSL 216.16■□□□□ 0.184e-6■■■■□ 24.8
SMNDC1O75940 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.172e-6■■■■□ 24.8
SMNDC1O75940 BAIAP2-209ENST00000572329 2133 ntTSL 216.04■□□□□ 0.169e-6■■■■□ 24.8
SMNDC1O75940 TOP3B-206ENST00000436282 2890 ntTSL 216■□□□□ 0.152e-6■■■■□ 24.8
SMNDC1O75940 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.151e-6■■■■□ 24.8
SMNDC1O75940 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC15.94■□□□□ 0.149e-6■■■■□ 24.8
SMNDC1O75940 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC15.78■□□□□ 0.122e-6■■■■□ 24.8
SMNDC1O75940 CLASRP-202ENST00000391952 2213 ntTSL 1 (best)15.7■□□□□ 0.12e-6■■■■□ 24.8
SMNDC1O75940 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.19e-6■■■■□ 24.8
SMNDC1O75940 TOP3A-202ENST00000461127 823 ntTSL 315.65■□□□□ 0.19e-6■■■■□ 24.8
SMNDC1O75940 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.082e-6■■■■□ 24.8
SMNDC1O75940 TOP3B-214ENST00000457270 2956 ntTSL 515.49■□□□□ 0.072e-6■■■■□ 24.8
SMNDC1O75940 AMDHD2-207ENST00000563453 555 ntTSL 215.45■□□□□ 0.066e-6■■■■□ 24.8
SMNDC1O75940 ACTG1-209ENST00000575659 742 ntTSL 315.42■□□□□ 0.064e-10■■■■□ 24.8
SMNDC1O75940 KLHDC4-218ENST00000567298 4572 ntTSL 515.41■□□□□ 0.069e-6■■■■□ 24.8
SMNDC1O75940 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC15.41■□□□□ 0.064e-6■■■■□ 24.8
SMNDC1O75940 KLHDC4-215ENST00000566349 1377 ntTSL 215.4■□□□□ 0.069e-6■■■■□ 24.8
SMNDC1O75940 BSG-210ENST00000576925 611 ntTSL 215.38■□□□□ 0.052e-6■■■■□ 24.8
SMNDC1O75940 BSG-207ENST00000573216 545 ntTSL 415.38■□□□□ 0.052e-6■■■■□ 24.8
SMNDC1O75940 MAD1L1-212ENST00000450235 850 ntTSL 315.36■□□□□ 0.052e-6■■■■□ 24.8
SMNDC1O75940 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC15.24■□□□□ 0.032e-6■■■■□ 24.8
SMNDC1O75940 CSNK1D-205ENST00000403276 1040 ntTSL 215.1■□□□□ 0.014e-6■■■■□ 24.8
SMNDC1O75940 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 09e-6■■■■□ 24.8
SMNDC1O75940 CSNK1D-217ENST00000581241 6094 ntTSL 215.04■□□□□ -04e-6■■■■□ 24.8
SMNDC1O75940 BSG-214ENST00000614867 960 ntTSL 3 BASIC14.96□□□□□ -0.012e-6■■■■□ 24.8
SMNDC1O75940 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC14.92□□□□□ -0.024e-6■■■■□ 24.8
SMNDC1O75940 BSG-215ENST00000618006 1329 ntTSL 2 BASIC14.77□□□□□ -0.042e-6■■■■□ 24.8
SMNDC1O75940 KLHDC4-210ENST00000562913 875 ntTSL 314.77□□□□□ -0.059e-6■■■■□ 24.8
SMNDC1O75940 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC14.71□□□□□ -0.059e-6■■■■□ 24.8
SMNDC1O75940 BAIAP2-202ENST00000321300 2879 ntAPPRIS P4 TSL 1 (best) BASIC14.69□□□□□ -0.069e-6■■■■□ 24.8
SMNDC1O75940 TOP3B-213ENST00000457179 3061 ntTSL 514.69□□□□□ -0.062e-6■■■■□ 24.8
SMNDC1O75940 LRSAM1-206ENST00000483302 1994 ntTSL 214.67□□□□□ -0.069e-6■■■■□ 24.8
SMNDC1O75940 ACTG1-206ENST00000573283 2002 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.064e-10■■■■□ 24.8
SMNDC1O75940 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.079e-6■■■■□ 24.8
SMNDC1O75940 LRSAM1-201ENST00000300417 3146 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.079e-6■■■■□ 24.8
SMNDC1O75940 GPAA1-203ENST00000524418 825 ntTSL 314.57□□□□□ -0.089e-6■■■■□ 24.8
SMNDC1O75940 BAIAP2-208ENST00000572073 782 ntTSL 314.57□□□□□ -0.089e-6■■■■□ 24.8
SMNDC1O75940 ZNF248-206ENST00000485560 1705 ntTSL 1 (best)14.44□□□□□ -0.19e-6■■■■□ 24.8
SMNDC1O75940 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC14.24□□□□□ -0.132e-6■■■■□ 24.8
SMNDC1O75940 CSNK1D-223ENST00000584472 586 ntTSL 414.16□□□□□ -0.144e-6■■■■□ 24.8
SMNDC1O75940 BSG-213ENST00000613627 689 ntTSL 314.1□□□□□ -0.152e-6■■■■□ 24.8
SMNDC1O75940 AMDHD2-202ENST00000302956 3273 ntTSL 1 (best) BASIC14.08□□□□□ -0.164e-6■■■■□ 24.8
SMNDC1O75940 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.169e-6■■■■□ 24.8
SMNDC1O75940 CSNK1D-212ENST00000580061 578 ntTSL 314.04□□□□□ -0.164e-6■■■■□ 24.8
SMNDC1O75940 BSG-206ENST00000572899 582 ntTSL 213.94□□□□□ -0.182e-6■■■■□ 24.8
SMNDC1O75940 TOP3B-202ENST00000398793 3107 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.182e-6■■■■□ 24.8
SMNDC1O75940 ACTG1-215ENST00000576917 1958 ntTSL 513.92□□□□□ -0.184e-10■■■■□ 24.8
SMNDC1O75940 LRSAM1-205ENST00000472068 850 ntTSL 513.87□□□□□ -0.199e-6■■■■□ 24.8
SMNDC1O75940 KLHDC4-208ENST00000562261 1065 ntTSL 313.68□□□□□ -0.229e-6■■■■□ 24.8
SMNDC1O75940 EPS8L2-214ENST00000529680 551 ntTSL 413.64□□□□□ -0.239e-6■■■■□ 24.8
SMNDC1O75940 DNMT1-203ENST00000540357 4916 ntTSL 5 BASIC13.6□□□□□ -0.239e-6■■■■□ 24.8
SMNDC1O75940 EPS8L2-208ENST00000526909 3844 ntTSL 513.38□□□□□ -0.279e-6■■■■□ 24.8
SMNDC1O75940 BAIAP2-216ENST00000574027 604 ntTSL 413.34□□□□□ -0.279e-6■■■■□ 24.8
SMNDC1O75940 TRAF4-212ENST00000498540 748 ntTSL 313.32□□□□□ -0.283e-7■■■■□ 24.8
SMNDC1O75940 EIF3A-201ENST00000369144 6646 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.289e-6■■■■□ 24.8
SMNDC1O75940 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC13.17□□□□□ -0.39e-6■■■■□ 24.8
SMNDC1O75940 ACTG1-207ENST00000574671 1678 ntTSL 1 (best)13.15□□□□□ -0.319e-6■■■■□ 24.8
SMNDC1O75940 DNMT1-201ENST00000340748 5408 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.349e-6■■■■□ 24.8
SMNDC1O75940 LRSAM1-202ENST00000323301 3376 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.349e-6■■■■□ 24.8
SMNDC1O75940 DNMT1-228ENST00000592705 5215 ntTSL 1 (best)12.87□□□□□ -0.359e-6■■■■□ 24.8
SMNDC1O75940 CSNK1D-213ENST00000580446 612 ntTSL 312.86□□□□□ -0.354e-6■■■■□ 24.8
SMNDC1O75940 AMDHD2-206ENST00000563444 529 ntTSL 212.84□□□□□ -0.354e-6■■■■□ 24.8
SMNDC1O75940 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC12.74□□□□□ -0.379e-6■■■■□ 24.8
SMNDC1O75940 CSNK1D-219ENST00000581660 611 ntTSL 512.54□□□□□ -0.44e-6■■■■□ 24.8
SMNDC1O75940 CSNK1D-211ENST00000579316 692 ntTSL 212.54□□□□□ -0.44e-6■■■■□ 24.8
SMNDC1O75940 TRAF4-210ENST00000475329 544 ntTSL 312.53□□□□□ -0.43e-7■■■■□ 24.8
SMNDC1O75940 GPAA1-208ENST00000527144 767 ntTSL 312.49□□□□□ -0.419e-6■■■■□ 24.8
SMNDC1O75940 ACTG1-205ENST00000572105 1168 ntTSL 512.49□□□□□ -0.414e-10■■■■□ 24.8
SMNDC1O75940 EIF3A-203ENST00000541549 4495 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.419e-6■■■■□ 24.8
Retrieved 100 of 11,362 protein–RNA pairs in 139.7 ms