RNA–Protein interactions for RNA: ENST00000398793.6

TOP3B-202, Transcript of DNA topoisomerase III beta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOP3B, Length 3,107 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3B-202ENST00000398793 NISCHQ9Y2I1 1504 aa28.14■■■□□ 2.1
TOP3B-202ENST00000398793 DCAF8L2P0C7V8 631 aa25.14■■□□□ 1.61
TOP3B-202ENST00000398793 SHROOM4Q9ULL8 1493 aa24.53■■□□□ 1.52
TOP3B-202ENST00000398793 ABCC9O60706 1549 aa24.05■■□□□ 1.44
TOP3B-202ENST00000398793 CCDC180Q9P1Z9 1646 aa23.82■■□□□ 1.4
TOP3B-202ENST00000398793 SUPT5HO00267 1087 aaKnown RBP23.67■■□□□ 1.38
TOP3B-202ENST00000398793 ZCCHC6Q5VYS8 1495 aaKnown RBP23.49■■□□□ 1.35
TOP3B-202ENST00000398793 PABPN1Q86U42 306 aaKnown RBP eCLIP23.17■■□□□ 1.3
TOP3B-202ENST00000398793 SCRIBQ14160 1630 aa23.03■■□□□ 1.28
TOP3B-202ENST00000398793 DCAF1Q9Y4B6 1507 aa22.55■■□□□ 1.2
TOP3B-202ENST00000398793 NACADO15069 1562 aa22.51■■□□□ 1.19
TOP3B-202ENST00000398793 RB1CC1Q8TDY2 1594 aa22.5■■□□□ 1.19
TOP3B-202ENST00000398793 CECR2Q9BXF3 1484 aa22.42■■□□□ 1.18
TOP3B-202ENST00000398793 EHMT2Q96KQ7 1210 aa22.4■■□□□ 1.18
TOP3B-202ENST00000398793 MYO15BQ96JP2 1530 aa22.13■■□□□ 1.13
TOP3B-202ENST00000398793 RSF1Q96T23 1441 aaPredicted RBP22.13■■□□□ 1.13
TOP3B-202ENST00000398793 FAM9AQ8IZU1 332 aaPredicted RBP22.11■■□□□ 1.13
TOP3B-202ENST00000398793 MROH2BQ7Z745 1585 aa22.06■■□□□ 1.12
TOP3B-202ENST00000398793 CHIC1Q5VXU3 224 aa21.98■■□□□ 1.11
TOP3B-202ENST00000398793 UNC13AQ9UPW8 1703 aa21.98■■□□□ 1.11
TOP3B-202ENST00000398793 BICRAQ9NZM4 1560 aa21.89■■□□□ 1.09
TOP3B-202ENST00000398793 WIZO95785 1651 aa21.87■■□□□ 1.09
TOP3B-202ENST00000398793 TRIM41Q8WV44 630 aa21.78■■□□□ 1.08
TOP3B-202ENST00000398793 LOC105371045A0A1W2PR82 267 aa21.76■■□□□ 1.07
TOP3B-202ENST00000398793 DNAJC5BQ9UF47 199 aa21.73■■□□□ 1.07
TOP3B-202ENST00000398793 BAZ1AQ9NRL2 1556 aaPredicted RBP21.63■■□□□ 1.05
TOP3B-202ENST00000398793 SMARCA4P51532 1647 aa21.56■■□□□ 1.04
TOP3B-202ENST00000398793 RANGAP1P46060 587 aaPredicted RBP21.5■■□□□ 1.03
TOP3B-202ENST00000398793 CCDC88BA6NC98 1476 aa21.44■■□□□ 1.02
TOP3B-202ENST00000398793 BAZ1BQ9UIG0 1483 aaKnown RBP21.43■■□□□ 1.02
TOP3B-202ENST00000398793 ATAD2BQ9ULI0 1458 aa21.42■■□□□ 1.02
TOP3B-202ENST00000398793 EIF4G1Q04637 1599 aaKnown RBP21.38■■□□□ 1.01
TOP3B-202ENST00000398793 PELP1Q8IZL8 1130 aaKnown RBP21.35■■□□□ 1.01
TOP3B-202ENST00000398793 TTBK1Q5TCY1 1321 aaPredicted RBP21.31■■□□□ 1
TOP3B-202ENST00000398793 ABCC8Q09428 1581 aa21.29■■□□□ 1
TOP3B-202ENST00000398793 PPARGC1BQ86YN6 1023 aaKnown RBP21.29■■□□□ 1
TOP3B-202ENST00000398793 TOP2AP11388 1531 aaKnown RBP21.22■□□□□ 0.99
TOP3B-202ENST00000398793 HRCP23327 699 aa21.18■□□□□ 0.98
TOP3B-202ENST00000398793 CC2D2AQ9P2K1 1620 aa21.17■□□□□ 0.98
TOP3B-202ENST00000398793 SMARCA2P51531 1590 aa21.16■□□□□ 0.98
TOP3B-202ENST00000398793 UBTFP17480 764 aaKnown RBP21.07■□□□□ 0.96
TOP3B-202ENST00000398793 NESP48681 1621 aa21.03■□□□□ 0.96
TOP3B-202ENST00000398793 NCAPD3P42695 1498 aa20.99■□□□□ 0.95
TOP3B-202ENST00000398793 SOGA1O94964 1423 aa20.98■□□□□ 0.95
TOP3B-202ENST00000398793 RUSC2Q8N2Y8 1516 aa20.94■□□□□ 0.94
TOP3B-202ENST00000398793 WRNQ14191 1432 aaPredicted RBP eCLIP20.91■□□□□ 0.94
TOP3B-202ENST00000398793 PCGF6Q9BYE7 350 aa20.82■□□□□ 0.92
TOP3B-202ENST00000398793 PEG3Q9GZU2 1588 aa20.81■□□□□ 0.92
TOP3B-202ENST00000398793 CSRNP3Q8WYN3 585 aa20.8■□□□□ 0.92
TOP3B-202ENST00000398793 CADPSQ9ULU8 1353 aa20.8■□□□□ 0.92
TOP3B-202ENST00000398793 HMGXB3Q12766 1538 aa20.7■□□□□ 0.9
TOP3B-202ENST00000398793 MYT1Q01538 1121 aa20.69■□□□□ 0.9
TOP3B-202ENST00000398793 P3H3Q8IVL6 736 aa20.69■□□□□ 0.9
TOP3B-202ENST00000398793 SYNJ1O43426 1573 aa20.68■□□□□ 0.9
TOP3B-202ENST00000398793 ATP1B4Q9UN42 357 aaPredicted RBP20.68■□□□□ 0.9
TOP3B-202ENST00000398793 FBLN2P98095 1184 aa20.63■□□□□ 0.89
TOP3B-202ENST00000398793 CFTRP13569 1480 aa20.62■□□□□ 0.89
TOP3B-202ENST00000398793 FANCD2Q9BXW9 1451 aa20.62■□□□□ 0.89
TOP3B-202ENST00000398793 TDRD9Q8NDG6 1382 aaKnown RBP20.58■□□□□ 0.89
TOP3B-202ENST00000398793 RAD54L2Q9Y4B4 1467 aa20.57■□□□□ 0.88
TOP3B-202ENST00000398793 CUX1P39880 1505 aa20.52■□□□□ 0.88
TOP3B-202ENST00000398793 ARID3CA6NKF2 412 aa20.52■□□□□ 0.88
TOP3B-202ENST00000398793 ERCC6Q03468 1493 aa20.52■□□□□ 0.87
TOP3B-202ENST00000398793 CUX2O14529 1486 aa20.49■□□□□ 0.87
TOP3B-202ENST00000398793 SCAF1Q9H7N4 1312 aaKnown RBP20.44■□□□□ 0.86
TOP3B-202ENST00000398793 FGD5Q6ZNL6 1462 aa20.43■□□□□ 0.86
TOP3B-202ENST00000398793 CEP164Q9UPV0 1460 aa20.41■□□□□ 0.86
TOP3B-202ENST00000398793 PDS5BQ9NTI5 1447 aa20.4■□□□□ 0.86
TOP3B-202ENST00000398793 RAPGEF2Q9Y4G8 1499 aa20.39■□□□□ 0.85
TOP3B-202ENST00000398793 KIF27Q86VH2 1401 aa20.31■□□□□ 0.84
TOP3B-202ENST00000398793 AQRO60306 1485 aaKnown RBP eCLIP20.3■□□□□ 0.844e-7■■■■■ 29.7
TOP3B-202ENST00000398793 URB2Q14146 1524 aaKnown RBP20.3■□□□□ 0.84
TOP3B-202ENST00000398793 CEP162Q5TB80 1403 aa20.3■□□□□ 0.84
TOP3B-202ENST00000398793 APLP2Q06481 763 aa20.28■□□□□ 0.84
TOP3B-202ENST00000398793 TOPBP1Q92547 1522 aa20.28■□□□□ 0.84
TOP3B-202ENST00000398793 TOP2BQ02880 1626 aa20.26■□□□□ 0.83
TOP3B-202ENST00000398793 POLA1P09884 1462 aaPredicted RBP20.26■□□□□ 0.83
TOP3B-202ENST00000398793 ITGAEP38570 1179 aa20.24■□□□□ 0.83
TOP3B-202ENST00000398793 IGF1RP08069 1367 aa20.23■□□□□ 0.83
TOP3B-202ENST00000398793 CARMIL1Q5VZK9 1371 aa20.23■□□□□ 0.83
TOP3B-202ENST00000398793 KIF21AQ7Z4S6 1674 aa20.21■□□□□ 0.83
TOP3B-202ENST00000398793 GOLGA3Q08378 1498 aa20.2■□□□□ 0.82
TOP3B-202ENST00000398793 HNRNPUL2Q1KMD3 747 aaKnown RBP20.18■□□□□ 0.82
TOP3B-202ENST00000398793 CLIP1P30622 1438 aa20.17■□□□□ 0.82
TOP3B-202ENST00000398793 ZNF608Q9ULD9 1512 aaPredicted RBP20.15■□□□□ 0.82
TOP3B-202ENST00000398793 CHMP7Q8WUX9 453 aaPredicted RBP20.14■□□□□ 0.82
TOP3B-202ENST00000398793 LAMC3Q9Y6N6 1575 aa20.14■□□□□ 0.81
TOP3B-202ENST00000398793 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.13■□□□□ 0.81
TOP3B-202ENST00000398793 TNIKQ9UKE5 1360 aa20.12■□□□□ 0.81
TOP3B-202ENST00000398793 TRIM26Q12899 539 aaPredicted RBP20.12■□□□□ 0.81
TOP3B-202ENST00000398793 EEA1Q15075 1411 aa20.09■□□□□ 0.81
TOP3B-202ENST00000398793 DNMBPQ6XZF7 1577 aa20.05■□□□□ 0.8
TOP3B-202ENST00000398793 BIVM-ERCC5R4GMW8 1640 aa20.03■□□□□ 0.8
TOP3B-202ENST00000398793 KANK4Q5T7N3 995 aaPredicted RBP20.03■□□□□ 0.8
TOP3B-202ENST00000398793 MRC2Q9UBG0 1479 aa20.03■□□□□ 0.8
TOP3B-202ENST00000398793 GAPVD1Q14C86 1478 aa20.03■□□□□ 0.8
TOP3B-202ENST00000398793 PRXQ9BXM0 1461 aa19.95■□□□□ 0.78
TOP3B-202ENST00000398793 FHOD3Q2V2M9 1422 aa19.94■□□□□ 0.78
TOP3B-202ENST00000398793 ABCA10Q8WWZ4 1543 aa19.88■□□□□ 0.77
TOP3B-202ENST00000398793 FAM50AQ14320 339 aaKnown RBP19.86■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms