RNA–Protein interactions for RNA: ENST00000475329.5

TRAF4-210, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-210ENST00000475329 NISCHQ9Y2I1 1504 aa31.49■■■□□ 2.63
TRAF4-210ENST00000475329 CCDC180Q9P1Z9 1646 aa27.67■■■□□ 2.02
TRAF4-210ENST00000475329 ZCCHC6Q5VYS8 1495 aaKnown RBP26.45■■□□□ 1.82
TRAF4-210ENST00000475329 DCAF1Q9Y4B6 1507 aa26.09■■□□□ 1.77
TRAF4-210ENST00000475329 ABCC9O60706 1549 aa26.07■■□□□ 1.76
TRAF4-210ENST00000475329 DCAF8L2P0C7V8 631 aa25.86■■□□□ 1.73
TRAF4-210ENST00000475329 MYO15BQ96JP2 1530 aa25.82■■□□□ 1.72
TRAF4-210ENST00000475329 NACADO15069 1562 aa25.7■■□□□ 1.71
TRAF4-210ENST00000475329 RB1CC1Q8TDY2 1594 aa25.52■■□□□ 1.68
TRAF4-210ENST00000475329 SHROOM4Q9ULL8 1493 aa25.49■■□□□ 1.67
TRAF4-210ENST00000475329 SCRIBQ14160 1630 aa25.32■■□□□ 1.64
TRAF4-210ENST00000475329 UNC13AQ9UPW8 1703 aa25.1■■□□□ 1.61
TRAF4-210ENST00000475329 BICRAQ9NZM4 1560 aa24.71■■□□□ 1.55
TRAF4-210ENST00000475329 PABPN1Q86U42 306 aaKnown RBP eCLIP24.46■■□□□ 1.51
TRAF4-210ENST00000475329 SUPT5HO00267 1087 aaKnown RBP24.43■■□□□ 1.5
TRAF4-210ENST00000475329 CECR2Q9BXF3 1484 aa24.41■■□□□ 1.5
TRAF4-210ENST00000475329 BAZ1AQ9NRL2 1556 aaPredicted RBP24.37■■□□□ 1.49
TRAF4-210ENST00000475329 RSF1Q96T23 1441 aaPredicted RBP24.32■■□□□ 1.48
TRAF4-210ENST00000475329 MROH2BQ7Z745 1585 aa24.29■■□□□ 1.48
TRAF4-210ENST00000475329 SMARCA4P51532 1647 aa24.29■■□□□ 1.48
TRAF4-210ENST00000475329 WIZO95785 1651 aa24.15■■□□□ 1.46
TRAF4-210ENST00000475329 PEG3Q9GZU2 1588 aa23.99■■□□□ 1.43
TRAF4-210ENST00000475329 EIF4G1Q04637 1599 aaKnown RBP23.98■■□□□ 1.43
TRAF4-210ENST00000475329 TOP2AP11388 1531 aaKnown RBP23.92■■□□□ 1.42
TRAF4-210ENST00000475329 SMARCA2P51531 1590 aa23.9■■□□□ 1.42
TRAF4-210ENST00000475329 ATAD2BQ9ULI0 1458 aa23.83■■□□□ 1.41
TRAF4-210ENST00000475329 BAZ1BQ9UIG0 1483 aaKnown RBP23.73■■□□□ 1.39
TRAF4-210ENST00000475329 DNAJC5BQ9UF47 199 aa23.7■■□□□ 1.38
TRAF4-210ENST00000475329 HMGXB3Q12766 1538 aa23.69■■□□□ 1.38
TRAF4-210ENST00000475329 CC2D2AQ9P2K1 1620 aa23.66■■□□□ 1.38
TRAF4-210ENST00000475329 NCAPD3P42695 1498 aa23.64■■□□□ 1.38
TRAF4-210ENST00000475329 CCDC88BA6NC98 1476 aa23.58■■□□□ 1.37
TRAF4-210ENST00000475329 CHIC1Q5VXU3 224 aa23.35■■□□□ 1.33
TRAF4-210ENST00000475329 PRDM2Q13029 1718 aa23.22■■□□□ 1.31
TRAF4-210ENST00000475329 CFTRP13569 1480 aa23.09■■□□□ 1.29
TRAF4-210ENST00000475329 ABCC8Q09428 1581 aa23.08■■□□□ 1.29
TRAF4-210ENST00000475329 TRIM41Q8WV44 630 aa23.01■■□□□ 1.27
TRAF4-210ENST00000475329 CADPSQ9ULU8 1353 aa23.01■■□□□ 1.27
TRAF4-210ENST00000475329 LAMC3Q9Y6N6 1575 aa22.95■■□□□ 1.26
TRAF4-210ENST00000475329 WRNQ14191 1432 aaPredicted RBP eCLIP22.92■■□□□ 1.26
TRAF4-210ENST00000475329 SYNJ1O43426 1573 aa22.89■■□□□ 1.26
TRAF4-210ENST00000475329 BIVM-ERCC5R4GMW8 1640 aa22.86■■□□□ 1.25
TRAF4-210ENST00000475329 NESP48681 1621 aa22.84■■□□□ 1.25
TRAF4-210ENST00000475329 TOP2BQ02880 1626 aa22.83■■□□□ 1.25
TRAF4-210ENST00000475329 FANCD2Q9BXW9 1451 aa22.79■■□□□ 1.24
TRAF4-210ENST00000475329 CUX1P39880 1505 aa22.75■■□□□ 1.23
TRAF4-210ENST00000475329 KIF21AQ7Z4S6 1674 aa22.71■■□□□ 1.23
TRAF4-210ENST00000475329 CEP164Q9UPV0 1460 aa22.69■■□□□ 1.22
TRAF4-210ENST00000475329 PDS5BQ9NTI5 1447 aa22.69■■□□□ 1.22
TRAF4-210ENST00000475329 DNMBPQ6XZF7 1577 aa22.63■■□□□ 1.21
TRAF4-210ENST00000475329 EEA1Q15075 1411 aa22.59■■□□□ 1.21
TRAF4-210ENST00000475329 FAM9AQ8IZU1 332 aaPredicted RBP22.55■■□□□ 1.2
TRAF4-210ENST00000475329 TOPBP1Q92547 1522 aa22.55■■□□□ 1.2
TRAF4-210ENST00000475329 SOGA1O94964 1423 aa22.55■■□□□ 1.2
TRAF4-210ENST00000475329 FGD5Q6ZNL6 1462 aa22.52■■□□□ 1.2
TRAF4-210ENST00000475329 URB2Q14146 1524 aaKnown RBP22.52■■□□□ 1.19
TRAF4-210ENST00000475329 RUSC2Q8N2Y8 1516 aa22.47■■□□□ 1.19
TRAF4-210ENST00000475329 MRC2Q9UBG0 1479 aa22.45■■□□□ 1.18
TRAF4-210ENST00000475329 POLA1P09884 1462 aaPredicted RBP22.41■■□□□ 1.18
TRAF4-210ENST00000475329 ERCC6Q03468 1493 aa22.4■■□□□ 1.18
TRAF4-210ENST00000475329 LOC105371045A0A1W2PR82 267 aa22.39■■□□□ 1.17
TRAF4-210ENST00000475329 WDR97A6NE52 1622 aa22.39■■□□□ 1.17
TRAF4-210ENST00000475329 KIF27Q86VH2 1401 aa22.37■■□□□ 1.17
TRAF4-210ENST00000475329 KIF21BO75037 1637 aa22.36■■□□□ 1.17
TRAF4-210ENST00000475329 CSRNP3Q8WYN3 585 aa22.36■■□□□ 1.17
TRAF4-210ENST00000475329 WDR62O43379 1518 aa22.36■■□□□ 1.17
TRAF4-210ENST00000475329 THOC2Q8NI27 1593 aaKnown RBP22.35■■□□□ 1.17
TRAF4-210ENST00000475329 CUX2O14529 1486 aa22.33■■□□□ 1.16
TRAF4-210ENST00000475329 ABCA10Q8WWZ4 1543 aa22.32■■□□□ 1.16
TRAF4-210ENST00000475329 RAD54L2Q9Y4B4 1467 aa22.3■■□□□ 1.16
TRAF4-210ENST00000475329 TARBP1Q13395 1621 aaKnown RBP22.27■■□□□ 1.16
TRAF4-210ENST00000475329 GOLGA3Q08378 1498 aa22.27■■□□□ 1.16
TRAF4-210ENST00000475329 ABCA5Q8WWZ7 1642 aa22.22■■□□□ 1.15
TRAF4-210ENST00000475329 ERICH3Q5RHP9 1530 aa22.21■■□□□ 1.15
TRAF4-210ENST00000475329 EHMT2Q96KQ7 1210 aa22.2■■□□□ 1.14
TRAF4-210ENST00000475329 PRXQ9BXM0 1461 aa22.17■■□□□ 1.14
TRAF4-210ENST00000475329 CUL7Q14999 1698 aa22.15■■□□□ 1.14
TRAF4-210ENST00000475329 IFT140Q96RY7 1462 aa22.15■■□□□ 1.14
TRAF4-210ENST00000475329 RAPGEF2Q9Y4G8 1499 aa22.14■■□□□ 1.13
TRAF4-210ENST00000475329 PBRM1Q86U86 1689 aa22.14■■□□□ 1.13
TRAF4-210ENST00000475329 TNIKQ9UKE5 1360 aa22.12■■□□□ 1.13
TRAF4-210ENST00000475329 IGF1RP08069 1367 aa22.11■■□□□ 1.13
TRAF4-210ENST00000475329 GAPVD1Q14C86 1478 aa22.09■■□□□ 1.13
TRAF4-210ENST00000475329 UBTFP17480 764 aaKnown RBP22.06■■□□□ 1.12
TRAF4-210ENST00000475329 TDRD9Q8NDG6 1382 aaKnown RBP22.05■■□□□ 1.12
TRAF4-210ENST00000475329 CARMIL1Q5VZK9 1371 aa22.02■■□□□ 1.12
TRAF4-210ENST00000475329 EIF4G3O43432 1585 aaKnown RBP22.01■■□□□ 1.11
TRAF4-210ENST00000475329 CEP162Q5TB80 1403 aa22.01■■□□□ 1.11
TRAF4-210ENST00000475329 ZNF608Q9ULD9 1512 aaPredicted RBP21.97■■□□□ 1.11
TRAF4-210ENST00000475329 AQRO60306 1485 aaKnown RBP eCLIP21.96■■□□□ 1.113e-10■■■■□ 20.6
TRAF4-210ENST00000475329 GRIN2BQ13224 1484 aa21.95■■□□□ 1.1
TRAF4-210ENST00000475329 ADAMTS12P58397 1594 aa21.94■■□□□ 1.1
TRAF4-210ENST00000475329 CTTNBP2Q8WZ74 1663 aa21.94■■□□□ 1.1
TRAF4-210ENST00000475329 CLIP1P30622 1438 aa21.86■■□□□ 1.09
TRAF4-210ENST00000475329 DNAJC5Q9H3Z4 198 aa21.85■■□□□ 1.09
TRAF4-210ENST00000475329 FHAD1B1AJZ9 1412 aa21.85■■□□□ 1.09
TRAF4-210ENST00000475329 SNAPC4Q5SXM2 1469 aa21.82■■□□□ 1.08
TRAF4-210ENST00000475329 MAGI1Q96QZ7 1491 aaPredicted RBP21.8■■□□□ 1.08
TRAF4-210ENST00000475329 SYNJ2O15056 1496 aa21.7■■□□□ 1.06
TRAF4-210ENST00000475329 GRIN2AQ12879 1464 aa21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms