RNA–Protein interactions for RNA: ENST00000541549.2

EIF3A-203, Transcript of eukaryotic translation initiation factor 3 subunit A, humanhuman

APPRIS P1 TSL 5 BASIC

Gene EIF3A, Length 4,495 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EIF3A-203ENST00000541549 DCAF8L2P0C7V8 631 aa20.45■□□□□ 0.86
EIF3A-203ENST00000541549 SUPT5HO00267 1087 aaKnown RBP20.03■□□□□ 0.8
EIF3A-203ENST00000541549 NISCHQ9Y2I1 1504 aa19.72■□□□□ 0.75
EIF3A-203ENST00000541549 SHROOM4Q9ULL8 1493 aa19.59■□□□□ 0.73
EIF3A-203ENST00000541549 EHMT2Q96KQ7 1210 aa19.35■□□□□ 0.69
EIF3A-203ENST00000541549 PCGF6Q9BYE7 350 aa19.21■□□□□ 0.67
EIF3A-203ENST00000541549 PELP1Q8IZL8 1130 aaKnown RBP18.89■□□□□ 0.61
EIF3A-203ENST00000541549 FAM9AQ8IZU1 332 aaPredicted RBP18.88■□□□□ 0.61
EIF3A-203ENST00000541549 TTBK1Q5TCY1 1321 aaPredicted RBP18.75■□□□□ 0.59
EIF3A-203ENST00000541549 CENPBP07199 599 aaPredicted RBP18.61■□□□□ 0.57
EIF3A-203ENST00000541549 APLP2Q06481 763 aa18.59■□□□□ 0.57
EIF3A-203ENST00000541549 ZEB1P37275 1124 aaPredicted RBP18.57■□□□□ 0.56
EIF3A-203ENST00000541549 CCER1Q8TC90 406 aaPredicted RBP18.52■□□□□ 0.56
EIF3A-203ENST00000541549 HRCP23327 699 aa18.44■□□□□ 0.54
EIF3A-203ENST00000541549 TRIM41Q8WV44 630 aa18.41■□□□□ 0.54
EIF3A-203ENST00000541549 YTHDC1Q96MU7 727 aaKnown RBP18.33■□□□□ 0.53
EIF3A-203ENST00000541549 RANGAP1P46060 587 aaPredicted RBP18.28■□□□□ 0.52
EIF3A-203ENST00000541549 PPARGC1BQ86YN6 1023 aaKnown RBP18.27■□□□□ 0.52
EIF3A-203ENST00000541549 TRIM26Q12899 539 aaPredicted RBP18.21■□□□□ 0.51
EIF3A-203ENST00000541549 ERICH6Q7L0X2 663 aa18.2■□□□□ 0.5
EIF3A-203ENST00000541549 MYT1Q01538 1121 aa18.18■□□□□ 0.5
EIF3A-203ENST00000541549 LOC105371045A0A1W2PR82 267 aa18.13■□□□□ 0.49
EIF3A-203ENST00000541549 UBTFP17480 764 aaKnown RBP18.09■□□□□ 0.49
EIF3A-203ENST00000541549 CHIC1Q5VXU3 224 aa18.06■□□□□ 0.48
EIF3A-203ENST00000541549 NEFLP07196 543 aa17.97■□□□□ 0.47
EIF3A-203ENST00000541549 ATP1B4Q9UN42 357 aaPredicted RBP17.9■□□□□ 0.46
EIF3A-203ENST00000541549 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.76■□□□□ 0.43
EIF3A-203ENST00000541549 DIEXFQ68CQ4 756 aaKnown RBP17.71■□□□□ 0.43
EIF3A-203ENST00000541549 HNRNPUL2Q1KMD3 747 aaKnown RBP17.7■□□□□ 0.42
EIF3A-203ENST00000541549 ITGAEP38570 1179 aa17.64■□□□□ 0.42
EIF3A-203ENST00000541549 GTF3C3Q9Y5Q9 886 aa17.59■□□□□ 0.41
EIF3A-203ENST00000541549 CNGB1Q14028 1251 aaPredicted RBP17.41■□□□□ 0.38
EIF3A-203ENST00000541549 POLR3GLQ9BT43 218 aa17.39■□□□□ 0.37
EIF3A-203ENST00000541549 ACIN1Q9UKV3 1341 aaKnown RBP17.34■□□□□ 0.37
EIF3A-203ENST00000541549 BCANQ96GW7 911 aa17.34■□□□□ 0.37
EIF3A-203ENST00000541549 DAXXQ9UER7 740 aaPredicted RBP17.29■□□□□ 0.36
EIF3A-203ENST00000541549 ZNF316A6NFI3 1004 aaPredicted RBP17.21■□□□□ 0.35
EIF3A-203ENST00000541549 RTL5Q5HYW3 569 aaPredicted RBP17.17■□□□□ 0.34
EIF3A-203ENST00000541549 NEUROD1Q13562 356 aa17.12■□□□□ 0.33
EIF3A-203ENST00000541549 FAM50AQ14320 339 aaKnown RBP17.07■□□□□ 0.32
EIF3A-203ENST00000541549 SCAF1Q9H7N4 1312 aaKnown RBP17.05■□□□□ 0.32
EIF3A-203ENST00000541549 ANP32CO43423 234 aa16.99■□□□□ 0.31
EIF3A-203ENST00000541549 CDK11AQ9UQ88 783 aaPredicted RBP16.99■□□□□ 0.31
EIF3A-203ENST00000541549 CLSPNQ9HAW4 1339 aa16.95■□□□□ 0.3
EIF3A-203ENST00000541549 TRIM52Q96A61 297 aa16.9■□□□□ 0.3
EIF3A-203ENST00000541549 DCAF1Q9Y4B6 1507 aa16.87■□□□□ 0.29
EIF3A-203ENST00000541549 MYT1LQ9UL68 1186 aa16.85■□□□□ 0.29
EIF3A-203ENST00000541549 FKBP8Q14318 412 aa16.84■□□□□ 0.29
EIF3A-203ENST00000541549 CSRNP3Q8WYN3 585 aa16.82■□□□□ 0.28
EIF3A-203ENST00000541549 ZNF326Q5BKZ1 582 aaKnown RBP16.79■□□□□ 0.28
EIF3A-203ENST00000541549 SLC4A1APQ9BWU0 796 aaKnown RBP16.77■□□□□ 0.28
EIF3A-203ENST00000541549 MIER1Q8N108 512 aa16.74■□□□□ 0.27
EIF3A-203ENST00000541549 PABPN1Q86U42 306 aaKnown RBP eCLIP16.73■□□□□ 0.27
EIF3A-203ENST00000541549 DDX10Q13206 875 aaKnown RBP16.7■□□□□ 0.26
EIF3A-203ENST00000541549 MYO15BQ96JP2 1530 aa16.68■□□□□ 0.26
EIF3A-203ENST00000541549 ANP32AP39687 249 aaKnown RBP16.67■□□□□ 0.26
EIF3A-203ENST00000541549 NPM2Q86SE8 214 aaKnown RBP16.66■□□□□ 0.26
EIF3A-203ENST00000541549 P3H3Q8IVL6 736 aa16.65■□□□□ 0.26
EIF3A-203ENST00000541549 HNRNPUQ00839 825 aaKnown RBP eCLIP16.64■□□□□ 0.25
EIF3A-203ENST00000541549 ABCC9O60706 1549 aa16.58■□□□□ 0.25
EIF3A-203ENST00000541549 EIF5BO60841 1220 aaKnown RBP16.58■□□□□ 0.24
EIF3A-203ENST00000541549 FAM9BQ8IZU0 186 aa16.54■□□□□ 0.24
EIF3A-203ENST00000541549 NBR1Q14596 966 aa16.53■□□□□ 0.24
EIF3A-203ENST00000541549 ARID3CA6NKF2 412 aa16.51■□□□□ 0.23
EIF3A-203ENST00000541549 IRX6P78412 446 aaPredicted RBP16.51■□□□□ 0.23
EIF3A-203ENST00000541549 BCL11AQ9H165 835 aa16.49■□□□□ 0.23
EIF3A-203ENST00000541549 HIRIP3Q9BW71 556 aaPredicted RBP16.49■□□□□ 0.23
EIF3A-203ENST00000541549 TONSLQ96HA7 1378 aa16.48■□□□□ 0.23
EIF3A-203ENST00000541549 CANXP27824 592 aaKnown RBP16.46■□□□□ 0.23
EIF3A-203ENST00000541549 SALL2Q9Y467 1007 aaPredicted RBP16.44■□□□□ 0.22
EIF3A-203ENST00000541549 CCDC136Q96JN2 1154 aa16.42■□□□□ 0.22
EIF3A-203ENST00000541549 ZBTB47Q9UFB7 747 aaPredicted RBP16.39■□□□□ 0.21
EIF3A-203ENST00000541549 ANP32EQ9BTT0 268 aa16.38■□□□□ 0.21
EIF3A-203ENST00000541549 ZCCHC6Q5VYS8 1495 aaKnown RBP16.37■□□□□ 0.21
EIF3A-203ENST00000541549 MRS2Q9HD23 443 aa16.35■□□□□ 0.21
EIF3A-203ENST00000541549 ZNF777Q9ULD5 760 aaPredicted RBP16.33■□□□□ 0.2
EIF3A-203ENST00000541549 TMC1Q8TDI8 760 aa16.3■□□□□ 0.2
EIF3A-203ENST00000541549 FBLN2P98095 1184 aa16.29■□□□□ 0.2
EIF3A-203ENST00000541549 CHIC2Q9UKJ5 165 aa16.29■□□□□ 0.2
EIF3A-203ENST00000541549 ARXQ96QS3 562 aa16.26■□□□□ 0.19
EIF3A-203ENST00000541549 SUPT16HQ9Y5B9 1047 aaKnown RBP16.25■□□□□ 0.19
EIF3A-203ENST00000541549 SENP3-EIF4A1A0A087X0R7 540 aa16.23■□□□□ 0.19
EIF3A-203ENST00000541549 CCDC180Q9P1Z9 1646 aa16.23■□□□□ 0.19
EIF3A-203ENST00000541549 CLIP1P30622 1438 aa16.23■□□□□ 0.19
EIF3A-203ENST00000541549 CEP162Q5TB80 1403 aa16.2■□□□□ 0.18
EIF3A-203ENST00000541549 SCRIBQ14160 1630 aa16.2■□□□□ 0.18
EIF3A-203ENST00000541549 HSP90AA1P07900 732 aaKnown RBP16.19■□□□□ 0.18
EIF3A-203ENST00000541549 UPF2Q9HAU5 1272 aaKnown RBP16.18■□□□□ 0.18
EIF3A-203ENST00000541549 SLC24A1O60721 1099 aa16.14■□□□□ 0.17
EIF3A-203ENST00000541549 NEFMP07197 916 aa16.14■□□□□ 0.17
EIF3A-203ENST00000541549 ANP32BQ92688 251 aaKnown RBP16.14■□□□□ 0.17
EIF3A-203ENST00000541549 EIF4G2P78344 907 aaKnown RBP eCLIP16.14■□□□□ 0.172e-13■□□□□ 10.3
EIF3A-203ENST00000541549 KDM2AQ9Y2K7 1162 aa16.11■□□□□ 0.17
EIF3A-203ENST00000541549 RSF1Q96T23 1441 aaPredicted RBP16.09■□□□□ 0.17
EIF3A-203ENST00000541549 GLIPR1L2Q4G1C9 344 aa16.09■□□□□ 0.17
EIF3A-203ENST00000541549 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.08■□□□□ 0.17
EIF3A-203ENST00000541549 SIN3AQ96ST3 1273 aa16.08■□□□□ 0.16
EIF3A-203ENST00000541549 RRP7BPQ9NSQ0 103 aa16.07■□□□□ 0.16
EIF3A-203ENST00000541549 RTN4Q9NQC3 1192 aaKnown RBP16.06■□□□□ 0.16
EIF3A-203ENST00000541549 MTUS2Q5JR59 1369 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms