RNA–Protein interactions for RNA: ENST00000581241.5

CSNK1D-217, Transcript of casein kinase 1 delta, humanhuman

TSL 2

Gene CSNK1D, Length 6,094 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1D-217ENST00000581241 DCAF8L2P0C7V8 631 aa24.3■■□□□ 1.48
CSNK1D-217ENST00000581241 SUPT5HO00267 1087 aaKnown RBP23.48■■□□□ 1.35
CSNK1D-217ENST00000581241 PELP1Q8IZL8 1130 aaKnown RBP23.39■■□□□ 1.34
CSNK1D-217ENST00000581241 NISCHQ9Y2I1 1504 aa23.04■■□□□ 1.28
CSNK1D-217ENST00000581241 SHROOM4Q9ULL8 1493 aa22.94■■□□□ 1.26
CSNK1D-217ENST00000581241 EHMT2Q96KQ7 1210 aa22.81■■□□□ 1.24
CSNK1D-217ENST00000581241 APLP2Q06481 763 aa22.58■■□□□ 1.21
CSNK1D-217ENST00000581241 ERICH6Q7L0X2 663 aa22.45■■□□□ 1.18
CSNK1D-217ENST00000581241 CENPBP07199 599 aaPredicted RBP22.44■■□□□ 1.18
CSNK1D-217ENST00000581241 PCGF6Q9BYE7 350 aa22.41■■□□□ 1.18
CSNK1D-217ENST00000581241 ZEB1P37275 1124 aaPredicted RBP22.35■■□□□ 1.17
CSNK1D-217ENST00000581241 CCER1Q8TC90 406 aaPredicted RBP22.32■■□□□ 1.16
CSNK1D-217ENST00000581241 MYT1Q01538 1121 aa22.29■■□□□ 1.16
CSNK1D-217ENST00000581241 FAM9AQ8IZU1 332 aaPredicted RBP22.17■■□□□ 1.14
CSNK1D-217ENST00000581241 TTBK1Q5TCY1 1321 aaPredicted RBP22.16■■□□□ 1.14
CSNK1D-217ENST00000581241 NEFLP07196 543 aa21.88■■□□□ 1.09
CSNK1D-217ENST00000581241 YTHDC1Q96MU7 727 aaKnown RBP21.78■■□□□ 1.08
CSNK1D-217ENST00000581241 TRIM41Q8WV44 630 aa21.78■■□□□ 1.08
CSNK1D-217ENST00000581241 RANGAP1P46060 587 aaPredicted RBP21.71■■□□□ 1.07
CSNK1D-217ENST00000581241 ATP1B4Q9UN42 357 aaPredicted RBP21.57■■□□□ 1.04
CSNK1D-217ENST00000581241 UBTFP17480 764 aaKnown RBP21.53■■□□□ 1.04
CSNK1D-217ENST00000581241 TRIM26Q12899 539 aaPredicted RBP21.48■■□□□ 1.03
CSNK1D-217ENST00000581241 HRCP23327 699 aa21.44■■□□□ 1.02
CSNK1D-217ENST00000581241 DAXXQ9UER7 740 aaPredicted RBP21.31■■□□□ 1
CSNK1D-217ENST00000581241 PPARGC1BQ86YN6 1023 aaKnown RBP21.28■■□□□ 1
CSNK1D-217ENST00000581241 POLR3GLQ9BT43 218 aa20.95■□□□□ 0.94
CSNK1D-217ENST00000581241 RTL5Q5HYW3 569 aaPredicted RBP20.94■□□□□ 0.94
CSNK1D-217ENST00000581241 ITGAEP38570 1179 aa20.92■□□□□ 0.94
CSNK1D-217ENST00000581241 DIEXFQ68CQ4 756 aaKnown RBP20.87■□□□□ 0.93
CSNK1D-217ENST00000581241 LOC105371045A0A1W2PR82 267 aa20.86■□□□□ 0.93
CSNK1D-217ENST00000581241 HNRNPUL2Q1KMD3 747 aaKnown RBP20.86■□□□□ 0.93
CSNK1D-217ENST00000581241 ZNF316A6NFI3 1004 aaPredicted RBP20.85■□□□□ 0.93
CSNK1D-217ENST00000581241 CHIC1Q5VXU3 224 aa20.79■□□□□ 0.92
CSNK1D-217ENST00000581241 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.71■□□□□ 0.91
CSNK1D-217ENST00000581241 CNGB1Q14028 1251 aaPredicted RBP20.68■□□□□ 0.9
CSNK1D-217ENST00000581241 CLSPNQ9HAW4 1339 aa20.65■□□□□ 0.9
CSNK1D-217ENST00000581241 MYT1LQ9UL68 1186 aa20.64■□□□□ 0.89
CSNK1D-217ENST00000581241 GTF3C3Q9Y5Q9 886 aa20.61■□□□□ 0.89
CSNK1D-217ENST00000581241 BCANQ96GW7 911 aa20.51■□□□□ 0.87
CSNK1D-217ENST00000581241 CDK11AQ9UQ88 783 aaPredicted RBP20.51■□□□□ 0.87
CSNK1D-217ENST00000581241 SLC4A1APQ9BWU0 796 aaKnown RBP20.48■□□□□ 0.87
CSNK1D-217ENST00000581241 FAM50AQ14320 339 aaKnown RBP20.41■□□□□ 0.86
CSNK1D-217ENST00000581241 ANP32CO43423 234 aa20.41■□□□□ 0.86
CSNK1D-217ENST00000581241 NEUROD1Q13562 356 aa20.35■□□□□ 0.85
CSNK1D-217ENST00000581241 TRIM52Q96A61 297 aa20.33■□□□□ 0.84
CSNK1D-217ENST00000581241 ACIN1Q9UKV3 1341 aaKnown RBP20.32■□□□□ 0.84
CSNK1D-217ENST00000581241 ANP32AP39687 249 aaKnown RBP20.19■□□□□ 0.82
CSNK1D-217ENST00000581241 ZBTB47Q9UFB7 747 aaPredicted RBP20.19■□□□□ 0.82
CSNK1D-217ENST00000581241 CANXP27824 592 aaKnown RBP20.11■□□□□ 0.81
CSNK1D-217ENST00000581241 ZNF326Q5BKZ1 582 aaKnown RBP20.07■□□□□ 0.8
CSNK1D-217ENST00000581241 NPM2Q86SE8 214 aaKnown RBP19.99■□□□□ 0.79
CSNK1D-217ENST00000581241 FKBP8Q14318 412 aa19.93■□□□□ 0.78
CSNK1D-217ENST00000581241 EIF5BO60841 1220 aaKnown RBP19.9■□□□□ 0.78
CSNK1D-217ENST00000581241 ANP32BQ92688 251 aaKnown RBP19.89■□□□□ 0.78
CSNK1D-217ENST00000581241 NEFMP07197 916 aa19.86■□□□□ 0.77
CSNK1D-217ENST00000581241 GLIPR1L2Q4G1C9 344 aa19.84■□□□□ 0.77
CSNK1D-217ENST00000581241 BCL11AQ9H165 835 aa19.83■□□□□ 0.77
CSNK1D-217ENST00000581241 DCAF1Q9Y4B6 1507 aa19.8■□□□□ 0.76
CSNK1D-217ENST00000581241 SLC24A1O60721 1099 aa19.76■□□□□ 0.75
CSNK1D-217ENST00000581241 UPF2Q9HAU5 1272 aaKnown RBP19.74■□□□□ 0.75
CSNK1D-217ENST00000581241 HSP90AA1P07900 732 aaKnown RBP19.71■□□□□ 0.75
CSNK1D-217ENST00000581241 HNRNPUQ00839 825 aaKnown RBP eCLIP19.71■□□□□ 0.753e-18■□□□□ 9.1
CSNK1D-217ENST00000581241 TONSLQ96HA7 1378 aa19.69■□□□□ 0.74
CSNK1D-217ENST00000581241 CSRNP3Q8WYN3 585 aa19.68■□□□□ 0.74
CSNK1D-217ENST00000581241 NBR1Q14596 966 aa19.67■□□□□ 0.74
CSNK1D-217ENST00000581241 PABPN1Q86U42 306 aaKnown RBP eCLIP19.63■□□□□ 0.733e-7■■■□□ 17.8
CSNK1D-217ENST00000581241 SCAF1Q9H7N4 1312 aaKnown RBP19.63■□□□□ 0.73
CSNK1D-217ENST00000581241 FAM9BQ8IZU0 186 aa19.62■□□□□ 0.73
CSNK1D-217ENST00000581241 P3H3Q8IVL6 736 aa19.62■□□□□ 0.73
CSNK1D-217ENST00000581241 DDX10Q13206 875 aaKnown RBP19.6■□□□□ 0.73
CSNK1D-217ENST00000581241 CCDC136Q96JN2 1154 aa19.6■□□□□ 0.73
CSNK1D-217ENST00000581241 ABCC9O60706 1549 aa19.55■□□□□ 0.72
CSNK1D-217ENST00000581241 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.55■□□□□ 0.72
CSNK1D-217ENST00000581241 ZNF777Q9ULD5 760 aaPredicted RBP19.53■□□□□ 0.72
CSNK1D-217ENST00000581241 FBLN2P98095 1184 aa19.52■□□□□ 0.71
CSNK1D-217ENST00000581241 ARID3CA6NKF2 412 aa19.51■□□□□ 0.71
CSNK1D-217ENST00000581241 TMC1Q8TDI8 760 aa19.45■□□□□ 0.7
CSNK1D-217ENST00000581241 DDRGK1Q96HY6 314 aa19.44■□□□□ 0.7
CSNK1D-217ENST00000581241 ARXQ96QS3 562 aa19.43■□□□□ 0.7
CSNK1D-217ENST00000581241 SALL2Q9Y467 1007 aaPredicted RBP19.43■□□□□ 0.7
CSNK1D-217ENST00000581241 MIER1Q8N108 512 aa19.43■□□□□ 0.7
CSNK1D-217ENST00000581241 WDR43Q15061 677 aaKnown RBP eCLIP19.4■□□□□ 0.7
CSNK1D-217ENST00000581241 MRS2Q9HD23 443 aa19.39■□□□□ 0.69
CSNK1D-217ENST00000581241 IRX6P78412 446 aaPredicted RBP19.37■□□□□ 0.69
CSNK1D-217ENST00000581241 ANP32EQ9BTT0 268 aa19.35■□□□□ 0.69
CSNK1D-217ENST00000581241 BECN1Q14457 450 aa19.33■□□□□ 0.68
CSNK1D-217ENST00000581241 CHGAP10645 457 aaKnown RBP19.28■□□□□ 0.68
CSNK1D-217ENST00000581241 TRIM44Q96DX7 344 aaPredicted RBP19.28■□□□□ 0.68
CSNK1D-217ENST00000581241 CCDC180Q9P1Z9 1646 aa19.27■□□□□ 0.68
CSNK1D-217ENST00000581241 SCRIBQ14160 1630 aa19.27■□□□□ 0.68
CSNK1D-217ENST00000581241 MYH16Q9H6N6 1097 aa19.26■□□□□ 0.67
CSNK1D-217ENST00000581241 STAG3Q9UJ98 1225 aa19.22■□□□□ 0.67
CSNK1D-217ENST00000581241 CHIC2Q9UKJ5 165 aa19.22■□□□□ 0.67
CSNK1D-217ENST00000581241 NCLP19338 710 aaKnown RBP19.2■□□□□ 0.66
CSNK1D-217ENST00000581241 GOLGA6L22H0YM25 854 aa19.18■□□□□ 0.66
CSNK1D-217ENST00000581241 EIF4G2P78344 907 aaKnown RBP eCLIP19.18■□□□□ 0.66
CSNK1D-217ENST00000581241 ESF1Q9H501 851 aaKnown RBP19.17■□□□□ 0.66
CSNK1D-217ENST00000581241 PPM1GO15355 546 aaPredicted RBP19.16■□□□□ 0.66
CSNK1D-217ENST00000581241 TNNT2P45379 298 aaPredicted RBP19.15■□□□□ 0.66
CSNK1D-217ENST00000581241 KDM2AQ9Y2K7 1162 aa19.14■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms