RNA–Protein interactions for RNA: ENST00000581660.5

CSNK1D-219, Transcript of casein kinase 1 delta, humanhuman

TSL 5

Gene CSNK1D, Length 611 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1D-219ENST00000581660 NISCHQ9Y2I1 1504 aa35.95■■■■□ 3.35
CSNK1D-219ENST00000581660 ABCC9O60706 1549 aa33.22■■■□□ 2.91
CSNK1D-219ENST00000581660 CCDC180Q9P1Z9 1646 aa32.62■■■□□ 2.81
CSNK1D-219ENST00000581660 DNAJC5BQ9UF47 199 aa31.83■■■□□ 2.69
CSNK1D-219ENST00000581660 RB1CC1Q8TDY2 1594 aa31.36■■■□□ 2.61
CSNK1D-219ENST00000581660 NACADO15069 1562 aa31■■■□□ 2.55
CSNK1D-219ENST00000581660 PABPN1Q86U42 306 aaKnown RBP eCLIP30.76■■■□□ 2.51
CSNK1D-219ENST00000581660 UNC13AQ9UPW8 1703 aa30.62■■■□□ 2.49
CSNK1D-219ENST00000581660 BICRAQ9NZM4 1560 aa30.5■■■□□ 2.47
CSNK1D-219ENST00000581660 DCAF8L2P0C7V8 631 aa30.45■■■□□ 2.47
CSNK1D-219ENST00000581660 MYO15BQ96JP2 1530 aa30.41■■■□□ 2.46
CSNK1D-219ENST00000581660 SHROOM4Q9ULL8 1493 aa30.11■■■□□ 2.41
CSNK1D-219ENST00000581660 CECR2Q9BXF3 1484 aa30.05■■■□□ 2.4
CSNK1D-219ENST00000581660 CC2D2AQ9P2K1 1620 aa30.01■■■□□ 2.39
CSNK1D-219ENST00000581660 DNAJC5Q9H3Z4 198 aa29.8■■■□□ 2.36
CSNK1D-219ENST00000581660 EIF4G1Q04637 1599 aaKnown RBP29.79■■■□□ 2.36
CSNK1D-219ENST00000581660 DCAF1Q9Y4B6 1507 aa29.72■■■□□ 2.35
CSNK1D-219ENST00000581660 ZCCHC6Q5VYS8 1495 aaKnown RBP29.66■■■□□ 2.34
CSNK1D-219ENST00000581660 SCRIBQ14160 1630 aa29.57■■■□□ 2.32
CSNK1D-219ENST00000581660 CUX2O14529 1486 aa29.02■■■□□ 2.24
CSNK1D-219ENST00000581660 ERCC6Q03468 1493 aa28.73■■■□□ 2.19
CSNK1D-219ENST00000581660 NCAPD3P42695 1498 aa28.64■■■□□ 2.17
CSNK1D-219ENST00000581660 ATAD2BQ9ULI0 1458 aa28.41■■■□□ 2.14
CSNK1D-219ENST00000581660 HMGXB3Q12766 1538 aa28.36■■■□□ 2.13
CSNK1D-219ENST00000581660 NESP48681 1621 aa28.34■■■□□ 2.13
CSNK1D-219ENST00000581660 SMARCA2P51531 1590 aa28.3■■■□□ 2.12
CSNK1D-219ENST00000581660 THOC2Q8NI27 1593 aaKnown RBP28.27■■■□□ 2.12
CSNK1D-219ENST00000581660 SMARCA4P51532 1647 aa28.19■■■□□ 2.1
CSNK1D-219ENST00000581660 LAMC3Q9Y6N6 1575 aa28.08■■■□□ 2.09
CSNK1D-219ENST00000581660 BAZ1BQ9UIG0 1483 aaKnown RBP28.07■■■□□ 2.08
CSNK1D-219ENST00000581660 TRIM41Q8WV44 630 aa28.05■■■□□ 2.08
CSNK1D-219ENST00000581660 PEG3Q9GZU2 1588 aa27.99■■■□□ 2.07
CSNK1D-219ENST00000581660 BAZ1AQ9NRL2 1556 aaPredicted RBP27.95■■■□□ 2.07
CSNK1D-219ENST00000581660 KIF21AQ7Z4S6 1674 aa27.95■■■□□ 2.07
CSNK1D-219ENST00000581660 PDS5BQ9NTI5 1447 aa27.92■■■□□ 2.06
CSNK1D-219ENST00000581660 MRC2Q9UBG0 1479 aa27.74■■■□□ 2.03
CSNK1D-219ENST00000581660 WDR62O43379 1518 aa27.72■■■□□ 2.03
CSNK1D-219ENST00000581660 CADPSQ9ULU8 1353 aa27.69■■■□□ 2.02
CSNK1D-219ENST00000581660 MROH2BQ7Z745 1585 aa27.66■■■□□ 2.02
CSNK1D-219ENST00000581660 OSCARQ8IYS5 282 aa27.49■■□□□ 1.99
CSNK1D-219ENST00000581660 CEP164Q9UPV0 1460 aa27.46■■□□□ 1.99
CSNK1D-219ENST00000581660 FANCD2Q9BXW9 1451 aa27.36■■□□□ 1.97
CSNK1D-219ENST00000581660 WIZO95785 1651 aa27.27■■□□□ 1.96
CSNK1D-219ENST00000581660 CFTRP13569 1480 aa27.25■■□□□ 1.95
CSNK1D-219ENST00000581660 RIMBP3CA6NJZ7 1639 aa27.24■■□□□ 1.95
CSNK1D-219ENST00000581660 RIMBP3BA6NNM3 1639 aa27.24■■□□□ 1.95
CSNK1D-219ENST00000581660 RIMBP3Q9UFD9 1639 aa27.24■■□□□ 1.95
CSNK1D-219ENST00000581660 URB2Q14146 1524 aaKnown RBP27.2■■□□□ 1.94
CSNK1D-219ENST00000581660 ARHGEF11O15085 1522 aa27.1■■□□□ 1.93
CSNK1D-219ENST00000581660 ZNF608Q9ULD9 1512 aaPredicted RBP26.96■■□□□ 1.91
CSNK1D-219ENST00000581660 IFT140Q96RY7 1462 aa26.96■■□□□ 1.91
CSNK1D-219ENST00000581660 TOP2AP11388 1531 aaKnown RBP26.93■■□□□ 1.9
CSNK1D-219ENST00000581660 PRDM2Q13029 1718 aa26.89■■□□□ 1.9
CSNK1D-219ENST00000581660 CYB5RLQ6IPT4 315 aa26.85■■□□□ 1.89
CSNK1D-219ENST00000581660 RSF1Q96T23 1441 aaPredicted RBP26.83■■□□□ 1.89
CSNK1D-219ENST00000581660 ARAP1Q96P48 1450 aa26.79■■□□□ 1.88
CSNK1D-219ENST00000581660 EIF4G3O43432 1585 aaKnown RBP26.79■■□□□ 1.88
CSNK1D-219ENST00000581660 TOPBP1Q92547 1522 aa26.77■■□□□ 1.88
CSNK1D-219ENST00000581660 TRHP20396 242 aaPredicted RBP26.75■■□□□ 1.87
CSNK1D-219ENST00000581660 CHD1O14646 1710 aa26.7■■□□□ 1.86
CSNK1D-219ENST00000581660 ABCC8Q09428 1581 aa26.69■■□□□ 1.86
CSNK1D-219ENST00000581660 DNMBPQ6XZF7 1577 aa26.63■■□□□ 1.85
CSNK1D-219ENST00000581660 TARBP1Q13395 1621 aaKnown RBP26.61■■□□□ 1.85
CSNK1D-219ENST00000581660 CCDC88BA6NC98 1476 aa26.6■■□□□ 1.85
CSNK1D-219ENST00000581660 AQRO60306 1485 aaKnown RBP eCLIP26.6■■□□□ 1.854e-8■■■■■ 40
CSNK1D-219ENST00000581660 AEBP2Q6ZN18 517 aaPredicted RBP26.51■■□□□ 1.83
CSNK1D-219ENST00000581660 FBLN2P98095 1184 aa26.48■■□□□ 1.83
CSNK1D-219ENST00000581660 POLA1P09884 1462 aaPredicted RBP26.46■■□□□ 1.83
CSNK1D-219ENST00000581660 CLASP1Q7Z460 1538 aa26.44■■□□□ 1.82
CSNK1D-219ENST00000581660 WDR97A6NE52 1622 aa26.35■■□□□ 1.81
CSNK1D-219ENST00000581660 SNAPC4Q5SXM2 1469 aa26.33■■□□□ 1.81
CSNK1D-219ENST00000581660 RAD54L2Q9Y4B4 1467 aa26.33■■□□□ 1.81
CSNK1D-219ENST00000581660 SYNJ1O43426 1573 aa26.33■■□□□ 1.8
CSNK1D-219ENST00000581660 TDRD9Q8NDG6 1382 aaKnown RBP26.32■■□□□ 1.8
CSNK1D-219ENST00000581660 SOGA1O94964 1423 aa26.29■■□□□ 1.8
CSNK1D-219ENST00000581660 MAGI1Q96QZ7 1491 aaPredicted RBP26.28■■□□□ 1.8
CSNK1D-219ENST00000581660 CHMP7Q8WUX9 453 aaPredicted RBP26.22■■□□□ 1.79
CSNK1D-219ENST00000581660 SYNJ2O15056 1496 aa26.19■■□□□ 1.78
CSNK1D-219ENST00000581660 GRIN2BQ13224 1484 aa26.18■■□□□ 1.78
CSNK1D-219ENST00000581660 GAPVD1Q14C86 1478 aa26.17■■□□□ 1.78
CSNK1D-219ENST00000581660 FGD5Q6ZNL6 1462 aa26.17■■□□□ 1.78
CSNK1D-219ENST00000581660 CUX1P39880 1505 aa26.04■■□□□ 1.76
CSNK1D-219ENST00000581660 PBRM1Q86U86 1689 aa25.99■■□□□ 1.75
CSNK1D-219ENST00000581660 ERCC6L2Q5T890 1561 aa25.92■■□□□ 1.74
CSNK1D-219ENST00000581660 ABCA5Q8WWZ7 1642 aa25.9■■□□□ 1.74
CSNK1D-219ENST00000581660 ABCA10Q8WWZ4 1543 aa25.87■■□□□ 1.73
CSNK1D-219ENST00000581660 CEP170Q5SW79 1584 aa25.84■■□□□ 1.73
CSNK1D-219ENST00000581660 GRIN2AQ12879 1464 aa25.84■■□□□ 1.73
CSNK1D-219ENST00000581660 NUP160Q12769 1436 aa25.82■■□□□ 1.72
CSNK1D-219ENST00000581660 KIF13AQ9H1H9 1805 aa25.81■■□□□ 1.72
CSNK1D-219ENST00000581660 SHROOM2Q13796 1616 aa25.79■■□□□ 1.72
CSNK1D-219ENST00000581660 ADAMTS12P58397 1594 aa25.75■■□□□ 1.71
CSNK1D-219ENST00000581660 FHAD1B1AJZ9 1412 aa25.63■■□□□ 1.69
CSNK1D-219ENST00000581660 ABCC10Q5T3U5 1492 aa25.6■■□□□ 1.69
CSNK1D-219ENST00000581660 WRNQ14191 1432 aaPredicted RBP eCLIP25.59■■□□□ 1.695e-6■■■■■ 38.2
CSNK1D-219ENST00000581660 PRG4Q92954 1404 aaPredicted RBP25.56■■□□□ 1.68
CSNK1D-219ENST00000581660 MAPKBP1O60336 1514 aa25.56■■□□□ 1.68
CSNK1D-219ENST00000581660 ERICH3Q5RHP9 1530 aa25.53■■□□□ 1.68
CSNK1D-219ENST00000581660 FAM69CQ0P6D2 419 aa25.53■■□□□ 1.68
CSNK1D-219ENST00000581660 KDM4FA0A1W2PPD8 638 aa25.52■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms