RNA–Protein interactions for RNA: ENST00000457179.5

TOP3B-213, Transcript of DNA topoisomerase III beta, humanhuman

TSL 5

Gene TOP3B, Length 3,061 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3B-213ENST00000457179 NISCHQ9Y2I1 1504 aa27.95■■■□□ 2.06
TOP3B-213ENST00000457179 DCAF8L2P0C7V8 631 aa24.45■■□□□ 1.5
TOP3B-213ENST00000457179 SHROOM4Q9ULL8 1493 aa24.31■■□□□ 1.48
TOP3B-213ENST00000457179 SUPT5HO00267 1087 aaKnown RBP23.68■■□□□ 1.38
TOP3B-213ENST00000457179 CCDC180Q9P1Z9 1646 aa23.58■■□□□ 1.37
TOP3B-213ENST00000457179 ZCCHC6Q5VYS8 1495 aaKnown RBP23.44■■□□□ 1.34
TOP3B-213ENST00000457179 ABCC9O60706 1549 aa23.12■■□□□ 1.29
TOP3B-213ENST00000457179 SCRIBQ14160 1630 aa22.62■■□□□ 1.21
TOP3B-213ENST00000457179 HRCP23327 699 aa22.61■■□□□ 1.21
TOP3B-213ENST00000457179 DCAF1Q9Y4B6 1507 aa22.56■■□□□ 1.2
TOP3B-213ENST00000457179 CHIC1Q5VXU3 224 aa22.4■■□□□ 1.18
TOP3B-213ENST00000457179 PPARGC1BQ86YN6 1023 aaKnown RBP22.35■■□□□ 1.17
TOP3B-213ENST00000457179 PABPN1Q86U42 306 aaKnown RBP eCLIP22.29■■□□□ 1.16
TOP3B-213ENST00000457179 MYO15BQ96JP2 1530 aa22.25■■□□□ 1.15
TOP3B-213ENST00000457179 PCGF6Q9BYE7 350 aa22.21■■□□□ 1.15
TOP3B-213ENST00000457179 EHMT2Q96KQ7 1210 aa22.15■■□□□ 1.14
TOP3B-213ENST00000457179 NACADO15069 1562 aa22.15■■□□□ 1.14
TOP3B-213ENST00000457179 CECR2Q9BXF3 1484 aa22.1■■□□□ 1.13
TOP3B-213ENST00000457179 RSF1Q96T23 1441 aaPredicted RBP22.09■■□□□ 1.13
TOP3B-213ENST00000457179 PELP1Q8IZL8 1130 aaKnown RBP22.08■■□□□ 1.13
TOP3B-213ENST00000457179 FAM9AQ8IZU1 332 aaPredicted RBP22.03■■□□□ 1.12
TOP3B-213ENST00000457179 LOC105371045A0A1W2PR82 267 aa22■■□□□ 1.11
TOP3B-213ENST00000457179 RB1CC1Q8TDY2 1594 aa21.99■■□□□ 1.11
TOP3B-213ENST00000457179 TRIM41Q8WV44 630 aa21.88■■□□□ 1.09
TOP3B-213ENST00000457179 MROH2BQ7Z745 1585 aa21.84■■□□□ 1.09
TOP3B-213ENST00000457179 WIZO95785 1651 aa21.66■■□□□ 1.06
TOP3B-213ENST00000457179 SCAF1Q9H7N4 1312 aaKnown RBP21.61■■□□□ 1.05
TOP3B-213ENST00000457179 BAZ1AQ9NRL2 1556 aaPredicted RBP21.48■■□□□ 1.03
TOP3B-213ENST00000457179 UNC13AQ9UPW8 1703 aa21.45■■□□□ 1.02
TOP3B-213ENST00000457179 BICRAQ9NZM4 1560 aa21.35■■□□□ 1.01
TOP3B-213ENST00000457179 SMARCA4P51532 1647 aa21.32■■□□□ 1
TOP3B-213ENST00000457179 CCDC88BA6NC98 1476 aa21.28■■□□□ 1
TOP3B-213ENST00000457179 MYT1Q01538 1121 aa21.24■□□□□ 0.99
TOP3B-213ENST00000457179 TRIM26Q12899 539 aaPredicted RBP21.24■□□□□ 0.99
TOP3B-213ENST00000457179 TTBK1Q5TCY1 1321 aaPredicted RBP21.23■□□□□ 0.99
TOP3B-213ENST00000457179 ABCC8Q09428 1581 aa21.18■□□□□ 0.98
TOP3B-213ENST00000457179 RANGAP1P46060 587 aaPredicted RBP21.15■□□□□ 0.98
TOP3B-213ENST00000457179 TOP2AP11388 1531 aaKnown RBP21.14■□□□□ 0.97
TOP3B-213ENST00000457179 ZEB1P37275 1124 aaPredicted RBP21.08■□□□□ 0.97
TOP3B-213ENST00000457179 BAZ1BQ9UIG0 1483 aaKnown RBP21.06■□□□□ 0.96
TOP3B-213ENST00000457179 SMARCA2P51531 1590 aa21.06■□□□□ 0.96
TOP3B-213ENST00000457179 UBTFP17480 764 aaKnown RBP21.06■□□□□ 0.96
TOP3B-213ENST00000457179 ATAD2BQ9ULI0 1458 aa21.05■□□□□ 0.96
TOP3B-213ENST00000457179 SOGA1O94964 1423 aa20.96■□□□□ 0.95
TOP3B-213ENST00000457179 NEUROD1Q13562 356 aa20.96■□□□□ 0.95
TOP3B-213ENST00000457179 ACIN1Q9UKV3 1341 aaKnown RBP20.95■□□□□ 0.94
TOP3B-213ENST00000457179 GTF3C3Q9Y5Q9 886 aa20.9■□□□□ 0.94
TOP3B-213ENST00000457179 RUSC2Q8N2Y8 1516 aa20.87■□□□□ 0.93
TOP3B-213ENST00000457179 CSRNP3Q8WYN3 585 aa20.86■□□□□ 0.93
TOP3B-213ENST00000457179 WRNQ14191 1432 aaPredicted RBP eCLIP20.85■□□□□ 0.93
TOP3B-213ENST00000457179 EIF4G1Q04637 1599 aaKnown RBP20.81■□□□□ 0.92
TOP3B-213ENST00000457179 PEG3Q9GZU2 1588 aa20.68■□□□□ 0.9
TOP3B-213ENST00000457179 CENPBP07199 599 aaPredicted RBP20.68■□□□□ 0.9
TOP3B-213ENST00000457179 DNAJC5BQ9UF47 199 aa20.67■□□□□ 0.9
TOP3B-213ENST00000457179 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.63■□□□□ 0.89
TOP3B-213ENST00000457179 NCAPD3P42695 1498 aa20.62■□□□□ 0.89
TOP3B-213ENST00000457179 SYNJ1O43426 1573 aa20.59■□□□□ 0.89
TOP3B-213ENST00000457179 CEP162Q5TB80 1403 aa20.55■□□□□ 0.88
TOP3B-213ENST00000457179 DIEXFQ68CQ4 756 aaKnown RBP20.52■□□□□ 0.88
TOP3B-213ENST00000457179 CCER1Q8TC90 406 aaPredicted RBP20.52■□□□□ 0.87
TOP3B-213ENST00000457179 CC2D2AQ9P2K1 1620 aa20.46■□□□□ 0.87
TOP3B-213ENST00000457179 YTHDC1Q96MU7 727 aaKnown RBP20.44■□□□□ 0.86
TOP3B-213ENST00000457179 APLP2Q06481 763 aa20.43■□□□□ 0.86
TOP3B-213ENST00000457179 TNIKQ9UKE5 1360 aa20.42■□□□□ 0.86
TOP3B-213ENST00000457179 HMGXB3Q12766 1538 aa20.41■□□□□ 0.86
TOP3B-213ENST00000457179 GOLGA3Q08378 1498 aa20.4■□□□□ 0.86
TOP3B-213ENST00000457179 RAPGEF2Q9Y4G8 1499 aa20.4■□□□□ 0.86
TOP3B-213ENST00000457179 CADPSQ9ULU8 1353 aa20.4■□□□□ 0.86
TOP3B-213ENST00000457179 EEA1Q15075 1411 aa20.39■□□□□ 0.85
TOP3B-213ENST00000457179 NESP48681 1621 aa20.36■□□□□ 0.85
TOP3B-213ENST00000457179 CFTRP13569 1480 aa20.36■□□□□ 0.85
TOP3B-213ENST00000457179 HNRNPUL2Q1KMD3 747 aaKnown RBP20.35■□□□□ 0.85
TOP3B-213ENST00000457179 ATP1B4Q9UN42 357 aaPredicted RBP20.35■□□□□ 0.85
TOP3B-213ENST00000457179 P3H3Q8IVL6 736 aa20.33■□□□□ 0.84
TOP3B-213ENST00000457179 CLIP1P30622 1438 aa20.32■□□□□ 0.84
TOP3B-213ENST00000457179 CEP164Q9UPV0 1460 aa20.31■□□□□ 0.84
TOP3B-213ENST00000457179 CUX1P39880 1505 aa20.31■□□□□ 0.84
TOP3B-213ENST00000457179 CUX2O14529 1486 aa20.24■□□□□ 0.83
TOP3B-213ENST00000457179 KIF27Q86VH2 1401 aa20.24■□□□□ 0.83
TOP3B-213ENST00000457179 TOP2BQ02880 1626 aa20.24■□□□□ 0.83
TOP3B-213ENST00000457179 FANCD2Q9BXW9 1451 aa20.2■□□□□ 0.82
TOP3B-213ENST00000457179 ITGAEP38570 1179 aa20.18■□□□□ 0.82
TOP3B-213ENST00000457179 RAD54L2Q9Y4B4 1467 aa20.15■□□□□ 0.82
TOP3B-213ENST00000457179 FGD5Q6ZNL6 1462 aa20.13■□□□□ 0.81
TOP3B-213ENST00000457179 TDRD9Q8NDG6 1382 aaKnown RBP20.1■□□□□ 0.81
TOP3B-213ENST00000457179 IGF1RP08069 1367 aa20.09■□□□□ 0.81
TOP3B-213ENST00000457179 BCL11AQ9H165 835 aa20.08■□□□□ 0.81
TOP3B-213ENST00000457179 KANK4Q5T7N3 995 aaPredicted RBP20.08■□□□□ 0.8
TOP3B-213ENST00000457179 CARMIL1Q5VZK9 1371 aa20.07■□□□□ 0.8
TOP3B-213ENST00000457179 BIVM-ERCC5R4GMW8 1640 aa20.02■□□□□ 0.8
TOP3B-213ENST00000457179 PRXQ9BXM0 1461 aa20.02■□□□□ 0.8
TOP3B-213ENST00000457179 VPS8Q8N3P4 1428 aa20.01■□□□□ 0.79
TOP3B-213ENST00000457179 KIF21BO75037 1637 aa20.01■□□□□ 0.79
TOP3B-213ENST00000457179 ZNF316A6NFI3 1004 aaPredicted RBP19.99■□□□□ 0.79
TOP3B-213ENST00000457179 ARID3CA6NKF2 412 aa19.99■□□□□ 0.79
TOP3B-213ENST00000457179 MIER1Q8N108 512 aa19.98■□□□□ 0.79
TOP3B-213ENST00000457179 POLA1P09884 1462 aaPredicted RBP19.93■□□□□ 0.78
TOP3B-213ENST00000457179 ARAP1Q96P48 1450 aa19.92■□□□□ 0.78
TOP3B-213ENST00000457179 TOPBP1Q92547 1522 aa19.92■□□□□ 0.78
TOP3B-213ENST00000457179 PDS5BQ9NTI5 1447 aa19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms